snakemake/snakemake-hpc-teaching-material

Issues

• Updating Job Submission to v8+

  #55 opened 4 months ago by cmeesters
  1

• handout copyright notice is outdated

  #126 opened 4 months ago by cmeesters
  0

• Missing image in /creators/Decorating_the_Workflow_fixed.tex

  #103 opened 4 months ago by mlpgwdg
  2

• micromamba -> mamba

  #133 opened 4 months ago by cmeesters
  1

• only Mogon-NHR: add howto for CodeIDE on demand

  #137 opened 4 months ago by cmeesters
  0

• offer one base environment to clone

  #135 opened 4 months ago by cmeesters
  0

• document pixi usage

  #134 opened 4 months ago by cmeesters
  0

• new questions for 'Teaching Elsewhere'

  #80 opened 5 months ago by cmeesters
  0

• Data Management Support - Users and Creators

  #117 opened 7 months ago by cmeesters
  0

• currently, the release generator needs fixing.

  #105 opened 8 months ago by cmeesters
  0

• split Report section in Reports and Benchmarking

  #37 opened 8 months ago by cmeesters
  1

• User slides: file latency

  #48 opened 8 months ago by cmeesters
  1

• User Slides: setting the rate limiter

  #47 opened a year ago by cmeesters
  0

• Readme badges

  #86 opened 8 months ago by cmeesters
  0

• add copyrights and attributions

  #85 opened 8 months ago by cmeesters
  0

• Certificate generator: organizations give different participant list formats

  #82 opened 9 months ago by cmeesters
  1

• Complementing using curated workflows slides

  #77 opened 9 months ago by cmeesters
  1

• creators: show how to create Reports

  #50 opened 9 months ago by cmeesters
  1

• ALL Sections: Add Installation update, with Snakemake 8.0 release

  #45 opened 9 months ago by cmeesters
  1

• Migrate Software part to Snakemake v8+

  #54 opened 9 months ago by cmeesters
  1

• update the adapt_sections script to accomodate for the split into creators, users, admins

  #38 opened 9 months ago by cmeesters
  1

• Move slide rendering to Python script, improve configurability by using yaml instead of LaTeX

  #73 opened 9 months ago by mptrsen
  1

• Refactor the "genomic variant calling workflow" intro

  #14 opened a year ago by mptrsen
  3

• erase all puns

  #17 opened a year ago by cmeesters
  3

• Snakemake logo on title page and improve Snakemake typesetting

  #49 opened a year ago by cmeesters
  2

• coding wrappers

  #44 opened a year ago by cmeesters
  7

• check cloze script files (matching the content?)

  #12 opened a year ago by cmeesters
  1

• fix editing artifact in PhD comics ("data analysis" page)

  #60 opened a year ago by mptrsen
  0

• Designing a Question List for teaching

  #51 opened a year ago by cmeesters
  2

• make date configurable

  #58 opened a year ago by mptrsen
  0

• typos and minor changes on "snakemake workflows catalogue" slide

  #62 opened a year ago by mptrsen
  0

• --directory vs workflow.source_path

  #57 opened a year ago by cmeesters
  0

• Admin section: describe potential global configuration settings for v8+

  #56 opened a year ago by cmeesters
  0

• USERS: Add section "How to report Issues"

  #40 opened a year ago by cmeesters
  1

• create slide set - using wrappers

  #18 opened a year ago by cmeesters
  1

• create configurable editor recommendation slide set

  #19 opened a year ago by cmeesters
  1

• No licence!

  #41 opened a year ago by cmeesters
  8

• Admin Section: add slide for slurm taskprolog temp-directory settings

  #46 opened a year ago by cmeesters
  0

• remove references to mogon

  #27 opened a year ago by cmeesters
  1

• Decide on British English or American English

  #24 opened a year ago by mptrsen
  3

• write "lecturer SOP"

  #30 opened a year ago by cmeesters
  1

• write "Onboarding SOP" for newcomers

  #34 opened a year ago by cmeesters
  2

• sample condarc shows reference to mogon

  #29 opened a year ago by cmeesters
  1

• Add logo and contributors for Uni Bonn

  #32 opened a year ago by mptrsen
  1

• create a config file template ...

  #8 opened a year ago by cmeesters
  1

• Unify preambles for the different slidesets

  #25 opened a year ago by mptrsen
  2

• Remove navigation buttons

  #22 opened a year ago by mptrsen
  3

• Remove all aux file from repo

  #15 opened a year ago by cmeesters
  1

• Add all pecularities to README

  #16 opened a year ago by cmeesters
  1

• new team name

  #20 opened a year ago by cmeesters
  1