snbogan
Postdoctoral researcher in Dept. of Ecology and Evolutionary Biology @ucsc Evolutionary ecologist using genomics to understand environmental adaptation
University of California, Santa CruzSanta Cruz, CA
Pinned Repositories
marineomics.github.io
Website for MarineOmics RCN-ECS. Hosts pages for panelist series and recommended practices for non-model genomics.
BigLeagueBayes
Just for kicks. Learning about statistics through the exploration of America's pastime.
CP_RNAseq
Analysis of RNAseq and BSseq data from a quantitative genetic experiment on purple sea urchin larvae
Cross_pHox_WGBS
Processing and analyses of whole genome bisulfite sequencing data from a study of purple urchin responses to abiotic stress
EpiRev
R code related to Bogan and Yi's review on epigenetic regulation of phenotypic plasticity
HotPurps_RNA
Analyses of relationships between parental environment, gene expression, and larval performance in purple urchins
Mediation_Power
A power analysis of sampling effort to detect indirect effects modeled using structural equations
Methyl_Mediation
Genome-scale mediation analyses for measuring indirect effects of the environment on expression via differential methylaion
Methyl_QG_Spurp
QG animal model looking at effects of DNA methylation on additive genetic variance for gene expression in purple urchin
Sp_RRBS_ATAC
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
snbogan's Repositories
snbogan/BigLeagueBayes
Just for kicks. Learning about statistics through the exploration of America's pastime.
snbogan/Sp_RRBS_ATAC
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
snbogan/CP_RNAseq
Analysis of RNAseq and BSseq data from a quantitative genetic experiment on purple sea urchin larvae
snbogan/Cross_pHox_WGBS
Processing and analyses of whole genome bisulfite sequencing data from a study of purple urchin responses to abiotic stress
snbogan/EpiRev
R code related to Bogan and Yi's review on epigenetic regulation of phenotypic plasticity
snbogan/HotPurps_RNA
Analyses of relationships between parental environment, gene expression, and larval performance in purple urchins
snbogan/Mediation_Power
A power analysis of sampling effort to detect indirect effects modeled using structural equations
snbogan/Methyl_Mediation
Genome-scale mediation analyses for measuring indirect effects of the environment on expression via differential methylaion
snbogan/Methyl_QG_Spurp
QG animal model looking at effects of DNA methylation on additive genetic variance for gene expression in purple urchin
snbogan/Plasticity_Selection
R code associated with a study of thermal plasticity's fitness costs and trade offs
snbogan/RNAseq_tutorial
A tutorial on executing a basic RNAseq -> differential expression pipeline
snbogan/Supralittoral_Temps
Time series temperature data collected from suppralittoral pools across coastal California w/ code for filtering, wrangling, and exploring the data.
snbogan/Urchin_Recruitment
An analysis of red and purple sea urchin recruitment in response to temperature, and how that response changes over time
snbogan/PBSE23_Poster
Figures for PBSE Fall 2023 conference
snbogan/PFE_perspective
Code for creating plots in Bogan, Sasaki, and Kelley, a perspective on detecting adaptive phenotypic plasticity and plasticity-first evolution
snbogan/QG_Purp_RNA
Quantiative genetic analyses of gene expression in larval urchins developmentall and transgenerationally exposed to simulated upwelling
snbogan/snbogan.github.io
My website