snibbor

CasMonitorQt5

PySide2 touchscreen-based GUI and python functions for sample processing and fluid control system for biomedical research

CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

ConCL

[ECCV2022] ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Image

DeepLabV3Plus-Pytorch-WSI

DeepLabv3 and DeepLabv3+ with pretrained weights for Pascal VOC & Cityscapes (Modified for Whole Slide Images)

Gastric-CPS-PDL1-ONEST

Multi-institutional inter-rater reliability study of 14 pathologists scoring PDL1 IHC by CPS in 108 cases of gastric cancer

HER2-IHC-ONEST-Multi-Institutional-IRR

Multi-institutional evaluation and inter-rater reliability of pathologist scoring HER2 immunohistochemistry

histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

IHC-virtual-stain-AttnGAN

Mixed_supervision

MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.

mmselfsup

OpenMMLab Self-Supervised Learning Toolbox and Benchmark

snibbor/CasMonitorQt5

PySide2 touchscreen-based GUI and python functions for sample processing and fluid control system for biomedical research

snibbor/CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

snibbor/ConCL

[ECCV2022] ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Image

snibbor/DeepLabV3Plus-Pytorch-WSI

DeepLabv3 and DeepLabv3+ with pretrained weights for Pascal VOC & Cityscapes (Modified for Whole Slide Images)

snibbor/Gastric-CPS-PDL1-ONEST

Multi-institutional inter-rater reliability study of 14 pathologists scoring PDL1 IHC by CPS in 108 cases of gastric cancer

snibbor/HER2-IHC-ONEST-Multi-Institutional-IRR

Multi-institutional evaluation and inter-rater reliability of pathologist scoring HER2 immunohistochemistry

snibbor/histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

snibbor/IHC-virtual-stain-AttnGAN

snibbor/Mixed_supervision

MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.

snibbor/mmselfsup

OpenMMLab Self-Supervised Learning Toolbox and Benchmark

snibbor/NV_stylegan2-ada-pytorch-WSI

StyleGAN2-ADA - Official PyTorch implementation

snibbor/ONEST_modified

Observers Needed to Evaluate Subjective Tests in R with extra functions to help save data and customize plots

snibbor/pdffigures2

Given a scholarly PDF, extract figures, tables, captions, and section titles.

snibbor/qupath

QuPath - Bioimage analysis & digital pathology

snibbor/qupath-extension-debug-script-editor-intellij

Peter Haub QuPath script debugger extension compatible with IntelliJ

snibbor/ReMix

[MICCAI2022] This repository holds the Pytorch implementation for the ReMix augmentation described in the paper "ReMix: A General and Efficient Framework for Multiple Instance Learning based Whole Slide Image Classification"

snibbor/seg-gini

SEGmentation using Graphs with Inexact aNd Incomplete labels

snibbor/Semantic-Segmentation-Suite

Semantic Segmentation Suite in TensorFlow. Implement, train, and test new Semantic Segmentation models easily!

snibbor/semanticGAN_WSI

Official repo for SemanticGAN https://nv-tlabs.github.io/semanticGAN/

snibbor/stainTransfer_CycleGAN_pytorch

Image-to-Image Translation in PyTorch

snibbor/stylegan2-pytorch-WSI

Implementation of Analyzing and Improving the Image Quality of StyleGAN (StyleGAN 2) in PyTorch

snibbor/TransMIL

TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification

snibbor/U-Frame

snibbor/valis

Virtual Alignment of pathoLogy Image Series