snystrom/cutNrun-pipeline

bed files have unusual fragment size distributions

snystrom opened this issue · 1 comments

The 'dupsRemoved.bed' files vs the '_allFrags.bed' files have different fragsize distributions. Why??

allFrags appears correct.

aBrC-100Wing-30m-HiCa-CnR-Pel_dm3_trim_q5_dupsRemoved_allFrags.bed
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aBrC-100Wing-30m-HiCa-CnR-Pel_dm3_trim_q5_dupsRemoved.bed
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dupsRemoved.bed has "score" not width. plotted on x?