Pinned Repositories
AMIDD
Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)
AMPL
The ATOM Modeling PipeLine (AMPL) is an open-source, modular, extensible software pipeline for building and sharing models to advance in silico drug discovery.
AutomatedStockTrading-DeepQ-Learning
Every day, millions of traders around the world are trying to make money by trading stocks. These days, physical traders are also being replaced by automated trading robots. Algorithmic trading market has experienced significant growth rate and large number of firms are using it. I have tried to build a Deep Q-learning reinforcement agent model to do automated stock trading.
Awesome_BigData_AI_DrugDiscovery
A collection of resources useful for leveraging big data and AI for drug discovery. It mainly serves as an orientation for new lab folks. It may be biased towards my lab interest.
boompow
BANANO's super official Proof of Work system (BoomPoW)
Cancer_Epitopes_CSHL
A pipeline to approximate the immunogenicity of peptides resulting from cancer mutations based on structure and other factors.
ClinicalTrails.Gov-Analysis-Pipeline
Analyze Clinical Trails.Gov Data
CloudCrunch
Script to run BOINC projects on jupyter notebooks
CloudRIC
testing RIC software compatibility with Jupyter
CUPofTEA
Characterization of a Unique Protein's overt functions with Taxonomy Enriched Automation
softbear's Repositories
softbear/AMIDD
Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)
softbear/AMPL
The ATOM Modeling PipeLine (AMPL) is an open-source, modular, extensible software pipeline for building and sharing models to advance in silico drug discovery.
softbear/AutomatedStockTrading-DeepQ-Learning
Every day, millions of traders around the world are trying to make money by trading stocks. These days, physical traders are also being replaced by automated trading robots. Algorithmic trading market has experienced significant growth rate and large number of firms are using it. I have tried to build a Deep Q-learning reinforcement agent model to do automated stock trading.
softbear/Awesome_BigData_AI_DrugDiscovery
A collection of resources useful for leveraging big data and AI for drug discovery. It mainly serves as an orientation for new lab folks. It may be biased towards my lab interest.
softbear/boompow
BANANO's super official Proof of Work system (BoomPoW)
softbear/CloudCrunch
Script to run BOINC projects on jupyter notebooks
softbear/CloudRIC
testing RIC software compatibility with Jupyter
softbear/Drip-SWAI2018
softbear/deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
softbear/drug-disovery-ML
Notebooks created as part of drug discovery ML research project during time as research associate at the Lewis Lab for Systems Biology and Cell Engineering
softbear/dynamo-release
Inclusive model of expression dynamics with scSLAM-seq and multiomics, vector field reconstruction and potential landscape mapping
softbear/Fiji-macro-scripts
Scripts to automate Fiji image analysis for personal use
softbear/genome-sketching
online notebooks for a review of genome sketching
softbear/Genomic-ULMFiT
ULMFiT for Genomic Sequence Data
softbear/GENTRL
Generative Tensorial Reinforcement Learning (GENTRL) model
softbear/icml18-jtnn
Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)
softbear/ivado-mila-dl-school-2019
IVADO/ Mila's Summer Deep Learning School
softbear/MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
softbear/mais-202-coding-challenge-f2019
softbear/mais-bootcamp-w2019
Course content for MAIS 202 (Winter 2019) very loosely based off of Machine Learning UC Berkeley material: https://github.com/mlberkeley/Machine-Learning-Decal-Fall-2018
softbear/modelling-language-of-life
softbear/MONET
MONET : MOdularising NEtwork Toolbox - doi: https://doi.org/10.1101/611418
softbear/Nofinger-Inc
PharmaHacks 2019 Project - Reverse engineer a chemical structure with limited information
softbear/Pharmacogenomics_Prediction_Pipeline_P3
softbear/scgen-reproducibility
softbear/softbear.github.io
softbear/squidpy_notebooks
Tutorials for Squidpy
softbear/stock-analysis-engine
Backtest 1000s of minute-by-minute trading algorithms for training AI with automated pricing data from: IEX, Tradier and FinViz. Datasets and trading performance automatically published to S3 for building AI training datasets for teaching DNNs how to trade. Runs on Kubernetes and docker-compose. >150 million trading history rows generated from +5000 algorithms. Heads up: Yahoo's Finance API was disabled on 2019-01-03 https://developer.yahoo.com/yql/
softbear/The-Databases-for-Drug-Discovery
The Databases for Drug Discovery (DDD)
softbear/wstrade-api
A JavaScript WealthSimple Trade API Wrapper