The following is a quick and dirty way to get my Scansnap S1300i working on Debian and Ubuntu.
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Download firmware: git clone https://github.com/sohnemann/scansnap-firmware.git
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Run the following commands in a Terminal
sudo mkdir -p /usr/share/sane/epjitsu sudo cp ./scansnap-firmware/* /usr/share/sane/epjitsu/. sudo cpan upgrade sane sudo apt-get install libsane-dev
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Logout, and then re-login.
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Try
sudo scanimage -L