solida-core
Robust, and ready-to-use collection of extensively validated bioinformatic pipelines
CRS4 - CENTER FOR ADVANCED STUDIES, RESEARCH AND DEVELOPMENT IN SARDINIA
Pinned Repositories
dica
dima
Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.
diva
DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
docs
solida-core documentation:
miRNA
miRNA analysis pipeline
musta
MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer
qcrs4
A pipeline for QC
solida
SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.
solida-gui
Container Docker application that facilitate the solida usage, via a friendly GUI
sride
Snakemake enabled pipeline for smallRNA-Seq identification
solida-core's Repositories
solida-core/solida
SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.
solida-core/dima
Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.
solida-core/dica
solida-core/diva
DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
solida-core/docs
solida-core documentation:
solida-core/miRNA
miRNA analysis pipeline
solida-core/musta
MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer
solida-core/qcrs4
A pipeline for QC
solida-core/ride
solida-core/solida-gui
Container Docker application that facilitate the solida usage, via a friendly GUI
solida-core/sride
Snakemake enabled pipeline for smallRNA-Seq identification
solida-core/test-data-DNA
A repository with test data for DNA analysis pipelines
solida-core/test-data-RNA
solida-core/test-data-somatic
solida-core/toolkit
DNA Reference Creator: this pipeline is aimed at downloading and building indexes and accessory files for reference genomes
solida-core/.github
solida-core/diva.wgs
solida-core/niasmic
Non Invasive Analysis of Somatic Mutations in Cancer
solida-core/solida-core