Pinned Repositories
AmpliconArchitect
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.
AmpliconSuite-pipeline
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
circosJS
d3 library to build circular graphs
DISCOVER
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
eccDNAdb
Project homepage: http://www.eccdnadb.org
gosling-website
Documentation website of Gosling.js
rnadt
A database for RNA structurome study. Provides data of RNA structure probing methods which are coupled with high-throughput sequencing.
SCITE
silhouette_Octave
Code MATLAB's silhouette function into Octave
visnormsc
A GUI tool normalizing single-cell RNA-seq data
solo7773's Repositories
solo7773/visnormsc
A GUI tool normalizing single-cell RNA-seq data
solo7773/AmpliconArchitect
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.
solo7773/AmpliconSuite-pipeline
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
solo7773/circosJS
d3 library to build circular graphs
solo7773/DISCOVER
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
solo7773/eccDNAdb
Project homepage: http://www.eccdnadb.org
solo7773/gosling-website
Documentation website of Gosling.js
solo7773/rnadt
A database for RNA structurome study. Provides data of RNA structure probing methods which are coupled with high-throughput sequencing.
solo7773/SCITE
solo7773/silhouette_Octave
Code MATLAB's silhouette function into Octave
solo7773/solo7773.github.io
Test github pages
solo7773/study