solonas13

Centrum Wiskunde & Informatica (CWI) Amsterdam, The Netherlands

Pinned Repositories

CNEFinder
CNEFinder: Finding Conserved Non-coding Elements in Genomes
Language:C++22 5 1315
MARS
MARS: improving Multiple circular sequence Alignment using Refined Sequences
Language:C++27 2 129
rrBDA-index
Text Indexing for Long Patterns
Language:C++10
asmf
Approximate String Matching via Filtering
Language:C++3 2 03
aw
AW: computing Avoided (or Overabundant) Words for biological sequence analysis
Language:C++4 3 03
bd-anchors
Bidirectional string anchors: a New String Sampling Mechanism.
Language:C++6 4 00
bear
BEst-Aligned Rotations
Language:C++2 3 13
ius
Indexing Uncertain Strings for Long Patterns
Language:C++2 2 00
maw
MAW: a suite on the computation and application of Minimal Absent Words
Language:C++16 5 414
MoTeX
MoTeX: A word-based HPC tool for single and structured MoTif eXtraction
Language:C++3 5 11

solonas13's Repositories

solonas13/maw
MAW: a suite on the computation and application of Minimal Absent Words
Language:C++16 5 414
solonas13/bd-anchors
Bidirectional string anchors: a New String Sampling Mechanism.
Language:C++6 4 00
solonas13/aw
AW: computing Avoided (or Overabundant) Words for biological sequence analysis
Language:C++4 3 03
solonas13/asmf
Approximate String Matching via Filtering
Language:C++3 2 03
solonas13/MoTeX
MoTeX: A word-based HPC tool for single and structured MoTif eXtraction
Language:C++3 5 11
solonas13/bear
BEst-Aligned Rotations
Language:C++2 3 13
solonas13/csc
Circular Sequence Comparison
Language:C++2 3 03
solonas13/ius
Indexing Uncertain Strings for Long Patterns
Language:C++2 2 00
solonas13/REAL
REAL: an efficient REad ALigner for next-generation sequencing reads
Language:C++2 3 12
solonas13/gapsmis
GapsMis
Language:C1 1 0
solonas13/rmqo
How to answer a small batch of RMQs or LCA queries in practice
Language:C++1 1 01
solonas13/miss
miss: identifying MISlabeled Species
Language:Python2 0