Pinned Repositories
assaytools
Python tools for the modeling and Bayesian analysis of fluorescence assays
BayesWithDad
cryoEM-learn
dispensing-errors-manuscript
IPython notebook to accompany dispensing errors manuscript
ensembler
Software pipeline for automating omics-scale protein modeling and simulation setup.
RMSD-NN
sonyahanson's Repositories
sonyahanson/BayesWithDad
sonyahanson/cryoEM-learn
sonyahanson/RMSD-NN
sonyahanson/assaytools
Python tools for the modeling and Bayesian analysis of fluorescence assays
sonyahanson/dispensing-errors-manuscript
IPython notebook to accompany dispensing errors manuscript
sonyahanson/ensembler
Software pipeline for automating omics-scale protein modeling and simulation setup.
sonyahanson/fluorescence-plotting-notebooks
This is kind of a scratch repository for things that don't quite fit in 'assaytools' or 'fluorescence-assay-manuscript' in choderalab.
sonyahanson/Hello-World
sonyahanson/ilikelog
sonyahanson/kinalysis
Scripts for analyzing simulations of kinases!
sonyahanson/kinase_msm
set of scripts to analyze kinases
sonyahanson/KinaseSlides
sonyahanson/mdtraj
A modern, open library for the analysis of molecular dynamics trajectories
sonyahanson/mozfest-assaytools
A teaching version of assaytools for Mozilla Festival.
sonyahanson/msm-pipeline
A pipeline for MSMs.
sonyahanson/MSMs
Markov state models
sonyahanson/nanowrimo2015
sonyahanson/octomore
finding eight or more parameters we can try for applying openpathsampling to kinases
sonyahanson/playtime
sonyahanson/SMH-CV
sonyahanson/sonyahanson.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
sonyahanson/tensorflow
Computation using data flow graphs for scalable machine learning
sonyahanson/uniprotenator
Small python script to download all pdb's related to a single uniprot accession number and view in pymol.
sonyahanson/yank
GPU-accelerated calculation of ligand binding affinities in implicit and explicit solvent using alchemical free energy methodologies