sooheelee
Biochemistry Ph.D. from Johns Hopkins SOM turned computational biologist specializing in genomics
Cambridge, Massachussetts
Pinned Repositories
gatk
Official code repository for GATK versions 4 and up
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
analysis_guides
10x Genomics analysis guides files
playa
quizapp
Answer seven geography questions
scorekeeper
Track hockey metrics
tourguide
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
sopa
Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
gatk-protected
Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
sooheelee's Repositories
sooheelee/analysis_guides
10x Genomics analysis guides files
sooheelee/tourguide
sooheelee/playa
sooheelee/scorekeeper
Track hockey metrics
sooheelee/quizapp
Answer seven geography questions