sooheelee

Biochemistry Ph.D. from Johns Hopkins SOM turned computational biologist specializing in genomics

Cambridge, Massachussetts

Pinned Repositories

gatk
Official code repository for GATK versions 4 and up
Language:Java1.7k 154 4.6k596
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Language:Java991 157 808371
sopa
Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)
Language:Python149 7 12821
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Language:Java285 50 597244
analysis_guides
10x Genomics analysis guides files
Language:Jupyter Notebook00
notebooks
Illustrative genomics data analysis notebooks
Language:Jupyter Notebook00
playa
Language:Java0 1 00
quizapp
Answer seven geography questions
Language:Java01
scorekeeper
Track hockey metrics
Language:Java00
tourguide
Language:Java00

sooheelee's Repositories

sooheelee/analysis_guides
10x Genomics analysis guides files
Language:Jupyter Notebook00
sooheelee/notebooks
Illustrative genomics data analysis notebooks
Language:Jupyter Notebook00
sooheelee/playa
Language:Java0 1 00
sooheelee/quizapp
Answer seven geography questions
Language:Java01
sooheelee/scorekeeper
Track hockey metrics
Language:Java00
sooheelee/tourguide
Language:Java00