sophiagosselin

ICE_BLAST

Iterative Cluster Expansion BLAST. Captures very divergent homologous sequences via gradual search space expansion.

intein_distribution

invader_sim

Simulates the evolution of intein invaded extein sequences based on simulated phylogenies and using a Monte-Carlo like process.

Kloub-et-al-2021

Associated R-scripts and other code involved with figure production and method analysis

Methylase_Insertions

Code used to construct local database, and extract metadata for https://doi.org/10.3390/genes14020288

PhagesDB_Databse_Scripts

Code for easily making local version of the phagesDB protein database, but with pham information tagged to ascession lines.

Script_Database

splice_alignment

tANI_tool

Script for creating a tANI distance matrix for use in phylogenetic reconstruction.

sophiagosselin/Script_Database

sophiagosselin/tANI_tool

Script for creating a tANI distance matrix for use in phylogenetic reconstruction.

sophiagosselin/ICE_BLAST

Iterative Cluster Expansion BLAST. Captures very divergent homologous sequences via gradual search space expansion.

sophiagosselin/intein_distribution

sophiagosselin/invader_sim

Simulates the evolution of intein invaded extein sequences based on simulated phylogenies and using a Monte-Carlo like process.

sophiagosselin/Kloub-et-al-2021

Associated R-scripts and other code involved with figure production and method analysis

sophiagosselin/Methylase_Insertions

Code used to construct local database, and extract metadata for https://doi.org/10.3390/genes14020288

sophiagosselin/PhagesDB_Databse_Scripts

Code for easily making local version of the phagesDB protein database, but with pham information tagged to ascession lines.

sophiagosselin/splice_alignment