sophie22

Clinical Scientist in AI at the Clinical Scientific Computing team at GSTT

@GSTT-CSC

Pinned Repositories

eggd_dias_batch
Language:Python1 3 612
eggd_dias_reports_workflow
Workflow definition for Dias reports
1 3 10
eggd_GATKgCNV_call
Language:Shell1 3 90
eggd_multiqc
Language:Shell1 3 190
hazen
Quality assurance framework for Magnetic Resonance Imaging
Language:Python22 5 22311
MLOps
Framework for building ML apps
Language:Python9 6 775
Antimicrobial
Language:Python00
CNVcalling_aux
Additional scripts and files used during the development of the GATK germline CNV calling pipeline
Language:Jupyter Notebook00
coverage_exercise_SR
Language:Python00
FSND
Public repository for the Full-Stack Nanodegree program.
Language:Python00

sophie22's Repositories

sophie22/Antimicrobial
Language:Python00
sophie22/CNVcalling_aux
Additional scripts and files used during the development of the GATK germline CNV calling pipeline
Language:Jupyter Notebook00
sophie22/coverage_exercise_SR
Language:Python00
sophie22/FSND
Public repository for the Full-Stack Nanodegree program.
Language:Python00
sophie22/gatk
Official code repository for GATK versions 4 and up
Language:Java0 0
sophie22/longQTsyndrome_networkAnalysis
Language:Jupyter Notebook
sophie22/MAFfilter
script to filter vcf for variants with MAF<1% and save transcripts used in a tsv
Language:Python
sophie22/mongovardb
Language:Python
sophie22/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.