spaceho

spaceho's Stars

• reefgenomics/SymPortal_framework

  SymPortal is an analytical tool used to identify Symbiodiniaceae genotypes using Illumina rDNA ITS2 amplicon NGS data.

  Language:Python215

• NicolaKriefall/sym_uptake

  Scripts used in Ali et al. paper (in press): "Recruit symbiosis establishment and Symbiodiniceae composition influenced by adult corals and reef sediment"

  Language:R1

• saradwms/Coral-Symbiont-Network-Resistance

  Code used in Resistance and Robustness of the Global Coral-Symbiont Network, Williams and Patterson 2020, Ecology

  Language:HTML1

• LangilleLab/microbiome_helper

  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

  Language:Python439204

• weecology/macroecotools

  Tools for Macroecological Analyses Using Python

  Language:Python913

• z0on/GO_MWU

  Rank-based Gene Ontology analysis of gene expression data

  Language:R4017

• garridoo/lotus

  Scripts related to the Lotus japonicus root microbiota manuscript Zgadzaj, Garrido-Oter et al., 2016

  Language:R57

• joey711/phyloseq

  phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

  Language:R591187

• neavemj/globalCoralMicrobiomes

  Statistical and graphical analysis of coral microbiomes. For a detailed post explaining these, head to:

  Language:HTML2

• picrust/picrust

  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

  Language:Python9039

• z0on/tag-based_RNAseq

  Cost-efficient genome-wide gene expression profiling

  Language:Python169

• MadsAlbertsen/multi-metagenome

  Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

  Language:Perl8044

• biocore/qiime

  Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

  Language:Python286265

• pzhaonet/R4Dummies

  3322

• RiceMicrobiome/Edwards-et-al.-2014

  Language:R1415

• meren/hmp-oral-microbiota

  Some data files and scripts for our oligotyping analysis of human oral microbiota.

  Language:R62