Pinned Repositories
segment_and_map
This repo includes scripts for segmenting spacetx data sets and mapping the results to a reference RNA-seq data set.
slicedimage
spacetx-biohub-writer
Conversion tool from biohub's DB format to spacetx format
spacetx-hca-flattener
spacetx-research
Contains research projects related to image-based transcriptomics assays
spacetx-writer
Convert supported filesets to the SpaceTx format
sptx-format
Image data format specification for spaceTx
starfish
starfish: unified pipelines for image-based transcriptomics
starfish-analysis
Contains analyses executed using the starfish package
starfish-workflows
Solutions for running at-scale workflows with starfish
spacetx's Repositories
spacetx/starfish
starfish: unified pipelines for image-based transcriptomics
spacetx/slicedimage
spacetx/spacetx-research
Contains research projects related to image-based transcriptomics assays
spacetx/spacetx-writer
Convert supported filesets to the SpaceTx format
spacetx/sptx-format
Image data format specification for spaceTx
spacetx/segment_and_map
This repo includes scripts for segmenting spacetx data sets and mapping the results to a reference RNA-seq data set.
spacetx/starfish-analysis
Contains analyses executed using the starfish package
spacetx/starfish-workflows
Solutions for running at-scale workflows with starfish
spacetx/spacetx-biohub-writer
Conversion tool from biohub's DB format to spacetx format
spacetx/spacetx-hca-flattener
spacetx/spacetx.github.io
SpaceTx website
spacetx/starfish-viz
A web-based visualization for image based transcriptomics data
spacetx/upload-validator
HumanCellAtlas upload-service validator for SpaceTx files