Nokogiri and libxml not playing with Rails on Mountain Lion?

Question

Nokogiri and libxml not playing with Rails on Mountain Lion?

AstonJ opened this issue 12 years ago · 20 comments

I've installed Nokogiri, and everything works fine in irb, however, in the Rails console (or when running any Rails command) I get:

WARNING: Nokogiri was built against LibXML version 2.8.0, but has dynamically loaded 2.7.8

nokogiri -v shows:

# Nokogiri (1.5.5)
    ---
    warnings: []
    nokogiri: 1.5.5
    ruby:
      version: 1.9.3
      platform: x86_64-darwin12.0.0
      description: ruby 1.9.3p194 (2012-04-20 revision 35410) [x86_64-darwin12.0.0]
      engine: ruby
    libxml:
      binding: extension
      compiled: 2.8.0
      loaded: 2.8.0

I installed Nokogiri with:

sudo gem install nokogiri -- --with-xml2-include=/usr/local/Cellar/libxml2/2.8.0/include/libxml2 --with-xml2-lib=/usr/local/Cellar/libxml2/2.8.0/lib --with-xslt-dir=/usr/local/Cellar/libxslt/1.1.26 --with-iconv-include=/usr/local/Cellar/libiconv/1.13.1/include --with-iconv-lib=/usr/local/Cellar/libiconv/1.13.1/lib

As libxml2 with brew now installs 2.8.0 (still showing 2.7.8 in the instructions on the Nokogiri site - which is what I followed first).

Is this is a bug? Or have I messed up the install somehow? (Thanks in advance for any help.)

Answer 1 · 2012-08-03T19:19:15.000Z

+1. Same problem here.

Ruby 1.9.3-p194, Rails 3.2.7, Nokogiri 1.5.5.

$ bundle
...
Using nokogiri (1.5.5)
...
$ rails c
Loading development environment (Rails 3.2.7)
>> require 'nokogiri'
=> false
>>

Answer 2 · 2012-08-04T02:34:14.000Z

It sounds like something is loading libxml2 before nokogiri is being loaded. Can you try running your rails commands like this:

$ DYLD_PRINT_LIBRARIES=1 rails c

And paste the output? It should be a fairly long list of dyld libraries. We need to figure out how libxml2 is being loaded. Thanks!

Answer 3 · 2012-08-04T11:23:48.000Z

Hey Aaron, thanks for the reply :)

Here's the output as requested:


$ DYLD_PRINT_LIBRARIES=1 rails c
dyld: loaded: /usr/bin/env
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /bin/bash
dyld: loaded: /usr/lib/libncurses.5.4.dylib
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /usr/bin/env
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /bin/bash
dyld: loaded: /usr/lib/libncurses.5.4.dylib
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /usr/bin/head
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /usr/bin/readlink
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /usr/bin/head
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /usr/bin/readlink
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /usr/bin/head
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /usr/bin/readlink
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /usr/bin/env
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /bin/bash
dyld: loaded: /usr/lib/libncurses.5.4.dylib
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
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dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
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dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
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dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
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dyld: loaded: /usr/lib/system/liblaunch.dylib
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dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
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dyld: loaded: /usr/lib/system/libsystem_network.dylib
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dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /bin/bash
dyld: loaded: /usr/lib/libncurses.5.4.dylib
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/bin/ruby
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/encdb.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/trans/transdb.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/pathname.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/bin/ruby
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libauto.dylib
dyld: loaded: /usr/lib/libc++abi.dylib
dyld: loaded: /usr/lib/libc++.1.dylib
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/encdb.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/trans/transdb.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/pathname.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/etc.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/psych.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/libyaml-0.2.dylib
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/stringio.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/strscan.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/date_core.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/digest/sha1.bundle
dyld: loaded: /usr/lib/libcrypto.0.9.8.dylib
dyld: loaded: /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
dyld: loaded: /usr/lib/libz.1.dylib
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/digest.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/iso_8859_1.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/zlib.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/readline.bundle
dyld: loaded: /usr/lib/libedit.3.dylib
dyld: loaded: /usr/lib/libncurses.5.4.dylib
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/openssl.bundle
dyld: loaded: /usr/lib/libssl.0.9.8.dylib
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/fcntl.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/bigdecimal.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/trans/single_byte.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/trans/escape.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/pg-0.14.0/lib/pg_ext.bundle
dyld: loaded: /usr/lib/libpq.5.dylib
dyld: loaded: /usr/lib/libssl.0.9.7.dylib
dyld: loaded: /usr/lib/libcrypto.0.9.7.dylib
dyld: loaded: /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
dyld: loaded: /System/Library/Frameworks/LDAP.framework/Versions/A/LDAP
dyld: loaded: /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
dyld: loaded: /System/Library/Frameworks/Security.framework/Versions/A/Security
dyld: loaded: /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
dyld: loaded: /usr/lib/libsqlite3.dylib
dyld: loaded: /usr/lib/libresolv.9.dylib
dyld: loaded: /usr/lib/libicucore.A.dylib
dyld: loaded: /usr/lib/libbsm.0.dylib
dyld: loaded: /usr/lib/libxar.1.dylib
dyld: loaded: /usr/lib/libstdc++.6.dylib
dyld: loaded: /usr/lib/libpam.2.dylib
dyld: loaded: /usr/lib/libOpenScriptingUtil.dylib
dyld: loaded: /usr/lib/libbz2.1.0.dylib
dyld: loaded: /usr/lib/libxml2.2.dylib
dyld: loaded: /usr/lib/libDiagnosticMessagesClient.dylib
dyld: loaded: /usr/lib/libsasl2.2.dylib
dyld: loaded: /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
dyld: loaded: /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
dyld: loaded: /usr/lib/system/libkxld.dylib
dyld: loaded: /System/Library/Frameworks/GSS.framework/Versions/A/GSS
dyld: loaded: /System/Library/Frameworks/OpenDirectory.framework/Versions/A/OpenDirectory
dyld: loaded: /System/Library/PrivateFrameworks/CommonAuth.framework/Versions/A/CommonAuth
dyld: loaded: /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
dyld: loaded: /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
dyld: loaded: /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
dyld: loaded: /usr/lib/liblangid.dylib
dyld: loaded: /usr/lib/libCRFSuite.dylib
dyld: loaded: /System/Library/PrivateFrameworks/GenerationalStorage.framework/Versions/A/GenerationalStorage
dyld: loaded: /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
dyld: loaded: /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
dyld: loaded: /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
dyld: loaded: /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS
dyld: loaded: /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth
dyld: loaded: /System/Library/PrivateFrameworks/DataDetectorsCore.framework/Versions/A/DataDetectorsCore
dyld: loaded: /usr/lib/libxslt.1.dylib
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/json-1.7.4/lib/json/ext/parser.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/utf_16be.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/utf_16le.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/utf_32be.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/enc/utf_32le.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/json-1.7.4/lib/json/ext/generator.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/socket.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/pg_array_parser-0.0.1/lib/pg_array_parser/pg_array_parser.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/therubyracer-0.10.1/ext/v8/v8.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/racc/cparse.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/hpricot-0.8.6/lib/hpricot_scan.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/hpricot-0.8.6/lib/fast_xs.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/1.9.1/x86_64-darwin12.0.0/digest/md5.bundle
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/nokogiri-1.5.5/lib/nokogiri/nokogiri.bundle
dyld: loaded: /usr/local/Cellar/libxslt/1.1.26/lib/libexslt.0.dylib
dyld: loaded: /usr/local/Cellar/libxslt/1.1.26/lib/libxslt.1.dylib
dyld: loaded: /usr/local/Cellar/libxml2/2.8.0/lib/libxml2.2.dylib
dyld: loaded: /usr/local/Cellar/libiconv/1.13.1/lib/libiconv.2.dylib
dyld: loaded: /usr/lib/libiconv.2.dylib
WARNING: Nokogiri was built against LibXML version 2.8.0, but has dynamically loaded 2.7.8
dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/bcrypt-ruby-3.0.1/lib/bcrypt_ext.bundle
Loading development environment (Rails 3.2.7)
>>

Just a quick note to say I've been uninstalling/installing many times since I first posted the issue, and I think the latest try (in relation to the DYLD output above) I had installed it this way:

brew uninstall libxml2
gem uninstall nokogiri
gem install nokogiri
brew install libxml2

Just let me know how/if you need me to reinstall and/or repeat the DYLD command if need be :)

Answer 4 · 2012-08-08T01:19:43.000Z

OK. So the interesting lines are these:

dyld: loaded: /Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/pg-0.14.0/lib/pg_ext.bundle
dyld: loaded: /usr/lib/libpq.5.dylib
dyld: loaded: /usr/lib/libssl.0.9.7.dylib
dyld: loaded: /usr/lib/libcrypto.0.9.7.dylib
dyld: loaded: /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
dyld: loaded: /System/Library/Frameworks/LDAP.framework/Versions/A/LDAP
dyld: loaded: /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
dyld: loaded: /System/Library/Frameworks/Security.framework/Versions/A/Security
dyld: loaded: /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
dyld: loaded: /usr/lib/libsqlite3.dylib
dyld: loaded: /usr/lib/libresolv.9.dylib
dyld: loaded: /usr/lib/libicucore.A.dylib
dyld: loaded: /usr/lib/libbsm.0.dylib
dyld: loaded: /usr/lib/libxar.1.dylib
dyld: loaded: /usr/lib/libstdc++.6.dylib
dyld: loaded: /usr/lib/libpam.2.dylib
dyld: loaded: /usr/lib/libOpenScriptingUtil.dylib
dyld: loaded: /usr/lib/libbz2.1.0.dylib
dyld: loaded: /usr/lib/libxml2.2.dylib

It looks like the postgresql gem somehow depends on libxml2. When the pg extension gets loaded, something causes libxml2 to be loaded. I'm betting that if you do ruby -rnokogiri -S rails c the warning will go away.

For fun, I used the graph gem and threw together a script to graph the dependencies of my pg dynamic library:

###
# $ ruby test.rb $(gem which pg_ext.bundle)
require 'graph'

SEEN = {}

def rawr_graph lib, grapher
  return if SEEN[lib]

  SEEN[lib] = true

  libs = `otool -L #{lib}`.split($/).map(&:strip).drop_while { |l|
    l.start_with? lib
  }.map { |string| string[/[^(]*/].strip }

  libs.each do |l|
    grapher.edge File.basename(lib), File.basename(l)
    rawr_graph l, grapher
  end
end

digraph do
  rotate
  boxes

  rawr_graph ARGV[0], self
  save 'omg'
end

If you run that program (like this $ ruby test.rb $(gem which pg_ext.bundle), then you should be able to open the omg.dot file (with graphviz). It looks like the dep tree is like this:

pg -> Kerberos -> Security -> libxar -> libxml2

AFAIK, the only way to get around this issue is to ether: have nokogiri link against the system libxml2 (brew uninstall libxml2, reinstall nokogiri) or to make sure nokogiri gets required before pg. I suspect you have nokogiri listed after pg in your Gemfile. I think if you move nokogiri above pg in your gemfile, this should go away.

Here is the graph on my system:

Answer 5 · 2012-08-08T01:43:55.000Z

Hi Aaron - thanks for the in-depth response :)

Unfortunately it doesn't work :(

$ ruby -rnokogiri -S rails c
WARNING: Nokogiri was built against LibXML version 2.8.0, but has dynamically loaded 2.7.8
Loading development environment (Rails 3.2.7)

So I uninstalled libxml2 then uninstalled nokogiri, then reinstalled (Nokogiri) - but now I get:

/Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/nokogiri-1.5.5/lib/nokogiri.rb:27:in `require': dlopen(/Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/nokogiri-1.5.5/lib/nokogiri/nokogiri.bundle, 9): Library not loaded: /usr/local/Cellar/libxml2/2.8.0/lib/libxml2.2.dylib (LoadError)

Then I uninstalled and reinstalled with:

gem install nokogiri -- --with-xml2-include=/usr/local/Cellar/libxml2/2.7.8/include/libxml2 --with-xml2-lib=/usr/local/Cellar/libxml2/2.7.8/lib --with-xslt-dir=/usr/local/Cellar/libxslt/1.1.26 --with-iconv-include=/usr/local/Cellar/libiconv/1.13.1/include --with-iconv-lib=/usr/local/Cellar/libiconv/1.13.1/lib

But it still gives me (what looks like the same) error - referring to 2.8.0 (weird!) (I also made sure Nokogiri is called before the pg gem in the Gemfile):

/Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/nokogiri-1.5.5/lib/nokogiri.rb:27:in `require': dlopen(/Users/Aston/.rbenv/versions/1.9.3-p194/lib/ruby/gems/1.9.1/gems/nokogiri-1.5.5/lib/nokogiri/nokogiri.bundle, 9): Library not loaded: /usr/local/Cellar/libxml2/2.8.0/lib/libxml2.2.dylib (LoadError)

I also installed graph, and tried to run your script but I get:

ruby desktop/test.rb $(gem which pg_ext.bundle)
otool: can't open file: libpq.5.dylib (No such file or directory)

Does any of that give you any further clues? Sorry to be a pain.

Answer 6 · 2012-08-08T04:44:07.000Z

Can you post your Gemfile?

Answer 7 · 2012-08-08T12:26:06.000Z

Here ya go Aaron:

snipped - no longer needed

Answer 8 · 2012-08-08T14:53:21.000Z

Hi Aaron, not sure if it's any help, but I created a new test app, and only added Nokogiri to the gem file (and also did sudo uninstall pg) but I still can't require nokogiri in Rails console:


[nokotest]$ DYLD_PRINT_LIBRARIES=1 rails c
dyld: loaded: /usr/bin/env
dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
dyld: loaded: /usr/lib/system/libcommonCrypto.dylib
dyld: loaded: /usr/lib/system/libcompiler_rt.dylib
dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
dyld: loaded: /usr/lib/system/libdnsinfo.dylib
dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
dyld: loaded: /usr/lib/system/libremovefile.dylib
dyld: loaded: /usr/lib/system/libsystem_blocks.dylib
dyld: loaded: /usr/lib/system/libsystem_c.dylib
dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
dyld: loaded: /usr/lib/system/libsystem_notify.dylib
dyld: loaded: /usr/lib/system/libsystem_sandbox.dylib
dyld: loaded: /usr/lib/system/libunc.dylib
dyld: loaded: /usr/lib/system/libunwind.dylib
dyld: loaded: /usr/lib/system/libxpc.dylib
dyld: loaded: /usr/lib/system/libcorecrypto.dylib
dyld: loaded: /usr/lib/libobjc.A.dylib
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dyld: loaded: /usr/lib/libSystem.B.dylib
dyld: loaded: /usr/lib/system/libcache.dylib
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dyld: loaded: /usr/lib/system/libcopyfile.dylib
dyld: loaded: /usr/lib/system/libdispatch.dylib
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dyld: loaded: /usr/lib/system/libdyld.dylib
dyld: loaded: /usr/lib/system/libkeymgr.dylib
dyld: loaded: /usr/lib/system/liblaunch.dylib
dyld: loaded: /usr/lib/system/libmacho.dylib
dyld: loaded: /usr/lib/system/libquarantine.dylib
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dyld: loaded: /usr/lib/system/libsystem_dnssd.dylib
dyld: loaded: /usr/lib/system/libsystem_info.dylib
dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
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dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
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dyld: loaded: /usr/lib/system/libsystem_kernel.dylib
dyld: loaded: /usr/lib/system/libsystem_m.dylib
dyld: loaded: /usr/lib/system/libsystem_network.dylib
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Loading development environment (Rails 3.2.7)
>>

[nokotest]$ rails c
Loading development environment (Rails 3.2.7)
>> require 'nokogiri'
=> false
>>

Answer 9 · 2012-08-08T17:16:36.000Z

You're successfully requiring nokogiri. require returns false in the event that nokogiri is already loaded. Bundler automatically loads the gems in the Gemfile, so if you do a require 'nokogiri' in the Rails console, I would expect it to return false.

Answer 10 · 2012-08-08T17:45:20.000Z

Sorry Aaron, I feel so stupid now!

Apologies for wasting your time - you are such a star for being so nice about it :-)

Answer 11 · 2012-08-10T00:42:48.000Z

@AstonJ don't worry about it! Are you still getting the warning?

Answer 12 · 2012-08-10T00:48:25.000Z

Nah, I think they actually stopped when I reinstalled it one of the other ways - but as I kept getting false on require I assumed it was still broke blush. Or it could be your suggestion of moving it up the Gemfile that fixed it - sorry I can't give you a definite answer.

Also, after all that, I ended up going back to Lion tonight - Mountain Lion is just so horribly buggy.

Thanks again for your help - you're a real gem :)

Answer 13 · 2012-08-10T18:41:52.000Z

No problem, glad to help out. I'll close this, and if anyone else gets warnings, they can comment and I'll reopen. :)

Answer 14 · 2012-10-02T17:51:28.000Z

Hi there -
I stumbled across this thread and I'm having the same exact problem. Half an hour of googling and experimenting has got me nowhere. Any thoughts on how to solve this? I've uninstall and reinstalled, I have homebrew and installed it with the relevant libraries:

gem install nokogiri -- --with-xml2-include=/usr/local/Cellar/libxml2/2.8.0/include/libxml2 --with-xml2-lib=/usr/local/Cellar/libxml2/2.8.0/lib --with-xslt-dir=/usr/local/Cellar/libxslt/1.1.26/

but still no dice. Any thoughts?

Answer 15 · 2012-10-02T18:46:41.000Z

From memory I think I did something like..

Moved gem 'nokogiri' in the Gemfile to the top (just below gem 'rails') then:

brew uninstall libxml2
gem uninstall nokogiri
gem install nokogiri

If that doesn't work you could try:

brew uninstall libxml2
gem uninstall nokogiri
gem install nokogiri
brew install libxml2

Answer 16 · 2012-10-02T18:54:25.000Z

Heyo - that did it. Makes sense regarding the above mentioned comment about pg requiring nokogiri and using other extensions. Thanks!!

Answer 17 · 2012-10-03T00:13:03.000Z

You're welcome - glad you got it sorted :)

Answer 18 · 2013-11-04T15:27:17.000Z

i just installed Mavericks and was having the same issue. From @tenderlove comments above i realized that Postgres was loading libxml before Nokogiri, however moving the Nokogiri gem declaration to the top of the Gemfile (as others suggested) did not work for me.

Instead, I used the libxml that ships with Postgres.app to build Nokogiri and was good to go:

bundle config build.pg --with-pg-config=/Applications/Postgres93.app/Contents/MacOS/bin/pg_config
# use Postgres.app libxml2 to compile Nokogiri
bundle config build.nokogiri --with-xml2-lib=/Applications/Postgres93.app/Contents/MacOS/lib --with-xml2-include=/Applications/Postgres93.app/Contents/MacOS/include/libxml2
bundle install

note: i have these gems installed locally in vendor/, not sure if this is a good system wide approach

Answer 19 · 2013-12-12T02:08:30.000Z

Thanks Firien for your comment. I have been dealing with this issue and following the previous comments and yours was really helpful to fix mine.

Answer 20 · 2014-06-17T01:23:29.000Z

Same here; kudos for Firien; I was able to load nokogiri 1.4.7 w/ Mavericks using this command:

bundle config build.nokogiri --with-xml2-lib=/Applications/Postgres.app/Contents/MacOS/lib --with-xml2-include=/Applications/Postgres.app/Contents/MacOS/include/libxml2
bundle install