Fall/Herbst-semester 2020
Mondays 9.00-9.45 (remote), 10.00-10.45 (remote)
Monday 11.00-11.45 (remote)
Dr. Hubert Rehrauer, Group Leader of Genome Informatics at FGCZ
Prof. Dr. Mark Robinson, Associate Professor of Statistical Genomics, IMLS, UZH
Ahmadreza Yousefkhani, M.Sc. student in Computational Biology and Bioinformatics
| Date | Lecturer | Topic | Exercise | JC1 | JC2 |
|---|---|---|---|---|---|
| 14.09.2020 | Mark + Hubert | admin; mol. bio. basics | R markdown; git(hub) | ||
| 21.09.2020 | Mark | interactive technology/statistics session | group exercise: technology pull request | ||
| 28.09.2020 | Hubert | NGS intro; exploratory data analysis | EDA in R | ||
| 05.10.2020 | Hubert | mapping | Rsubread | ||
| 12.10.2020 | Mark | limma + friends | linear model simulation + design matrices | ||
| 19.10.2020 | Hubert | RNA-seq quantification | RSEM | ||
| 26.10.2020 | Mark | edgeR+friends 1 | basic edgeR/voom | ||
| 02.11.2020 | Mark | edgeR+friends 2 | GLM/DEXSeq | ||
| 09.11.2020 | Kathi | hands-on session #1: RNA-seq | FASTQC/Salmon/etc. | X | X |
| 16.11.2020 | Hubert | single-cell 1: preprocessing, dim. reduction, clustering | X | X | |
| 23.11.2020 | Helena | hands-on session #2: cytometry | cytof null comparison | X | X |
| 30.11.2020 | Mark | single-cell 2: cell type definition, differential state | scRNA exercise 2 | X | X |
| 07.12.2020 | Pierre-Luc | hands-on session #3: single-cell RNA-seq | full scRNA-seq pipeline | X | X |
| 14.12.2020 | Mark | loose ends: HMM, EM, robustness | segmentation, peak finding | X | X |
Assuming you have git installed locally, you can check out the entire set of course materials with the following command (from command line):
git clone https://github.com/sta426hs2020/material.git
Alternatively, for a ZIP file of the repository, you can click on the (green) 'Clone or download' (top right) and then click 'Download ZIP'.