spectral-cockpit/opusreader2

Issues

• Support OPUS files with normalization in AB block

  #81 opened 4 months ago by Debora6991
  20

• Implement support for Tr matrix with relative times in OPUS

  #67 opened 2 years ago by luukvandervelden
  16

• Support new header entry for OPUS file posted here: https://github.com/wincowgerDEV/OpenSpecy-package/issues/118

  #95 opened a year ago by philipp-baumann
  3

• Road map to first CRAN release

  #89 opened a year ago by philipp-baumann
  1

• Error in strsplit(sample_name_long, split = ";") : non-character argument

  #104 opened 9 months ago by dylanbeaudette
  15

• v0.5.0.9000 -> v0.6.1: `read_opus()` fails

  #101 opened a year ago by iostovary
  6

• 🏗 Organize the function reference into sections/topics

  #26 opened a year ago by philipp-baumann
  0

• 👋 Collaborate with SpectroChemPy

  #37 opened a year ago by philipp-baumann
  0

• Unknown header entry for yet unmapped data block (b0-c0-t144-a1...)

  #82 opened a year ago by DominiqueAhouanhode
  9

• Order vignettes

  #90 opened a year ago by philipp-baumann
  1

• v0.5.0.9000 -> v0.6.1: `read_opus()` fails

  #102 opened a year ago by EstherDGoldstein-NOAA
  3

• Error reading an Opus file

  #94 opened a year ago by zecojls
  8

• Add R plot methods for `opusreader2` and `list_opusreader2` data classes

  #76 opened 2 years ago by philipp-baumann
  1

• 💂‍Think about the data structure for tests

  #18 opened a year ago by philipp-baumann
  1

• 💂‍ Check if is OPUS file

  #19 opened a year ago by philipp-baumann
  0

• Fix CI caching issue

  #88 opened a year ago by philipp-baumann
  1

• Complete the basic intro vignette

  #86 opened 2 years ago by philipp-baumann
  1

• Allow non-parsable blocks

  #96 opened a year ago by philipp-baumann
  1

• 💂‍Define lifecycle

  #29 opened a year ago by philipp-baumann
  1

• Discussion on design patterns of (meta)data management and extraction

  #59 opened a year ago by davidbenncsiro
  23

• 🧱 Helper to store parsed data in zarr data collection

  #33 opened a year ago by philipp-baumann
  2

• 🏗 Support power spectra in `create_dataset()`

  #42 opened 2 years ago by philipp-baumann
  2

• 🧱 Metadata extraction helper

  #44 opened a year ago by philipp-baumann
  1

• 👋 Consider ROpenSci publishing

  #17 opened 2 years ago by philipp-baumann
  0

• Make `opus_file()` return different test files

  #69 opened 2 years ago by philipp-baumann
  0

• Constrain list of exported functions

  #62 opened a year ago by philipp-baumann
  1

• 🏗 Support new block keys 132 & 136

  #58 opened 2 years ago by philipp-baumann
  5

• `read_opus()` fails with opusreader2_v0.1.0 on Linux, but main v0.5.0.900 OK

  #93 opened a year ago by davidbenncsiro
  13

• Absorbance vs reflectance from metadata

  #92 opened a year ago by davidbenncsiro
  7

• 🏗 Draft intro vignette

  #22 opened a year ago by philipp-baumann
  1

• 🧱 Helpers to filter spectra block types to extract

  #20 opened a year ago by philipp-baumann
  1

• 💂‍ Manage versioning via {fledge} workflow

  #38 opened a year ago by philipp-baumann
  1

• Add basic metadata for straight-forward data filters

  #84 opened 2 years ago by philipp-baumann
  4

• 🏗 Name first level of list returned by `read_opus()` with string containing file name (DSN)

  #51 opened 2 years ago by philipp-baumann
  4

• Simplify `create_dataset()`

  #60 opened 2 years ago by philipp-baumann
  1

• Fix list indenting when `parallel = TRUE`

  #79 opened 2 years ago by philipp-baumann
  1

• Support progress bar in `read_opus()`

  #71 opened 2 years ago by philipp-baumann
  2

• 🐙 Create a nice logo for the package

  #16 opened 2 years ago by philipp-baumann
  1

• Guarantee type stability of `read_opus()`

  #73 opened 2 years ago by philipp-baumann
  2

• Dedicated S3 class for the returned value of `read_opus()` planned?

  #68 opened 2 years ago by henningte
  32

• 🏗 Upon discussion: how to implement parallelized/chunked reading

  #23 opened 2 years ago by philipp-baumann
  10

• implement metadata extraction function

  #66 opened 2 years ago by ThomasKnecht
  1

• 💾 We can probably reduce the memory footprint (alloc read & parsed size)

  #52 opened 2 years ago by philipp-baumann
  13

• 🔧 Fix tic CI : Ubuntu lastest-(R)-relase and latest-(R)-devel fail

  #53 opened 2 years ago by philipp-baumann
  1

• ☁💂‍ Fix pre-commit config and files, add code check in GitHub actions

  #49 opened 2 years ago by philipp-baumann
  1

• 🧱 Helper to extract final spectra as matrix

  #36 opened 2 years ago by philipp-baumann
  4

• Introduce top-level `read_opus()`

  #27 opened 2 years ago by philipp-baumann
  25

• allow to read opus files from directories (recursive) which also contain other file types in read_opus()

  #45 opened 2 years ago by laura-summerauer
  3

• if dsn has more elements than 1: warning "condition has length > 1 ..."

  #40 opened 2 years ago by philipp-baumann
  0

• delete old opus reader

  #15 opened 2 years ago by ThomasKnecht
  1