spiros
Using data & cookies to improve human health; Professor Biomedical Informatics @UCL; Phenomics @BHFDSC
University College London, Institute of Health Informatics
Pinned Repositories
atyimo
atyimo: probabilistic record linkage for massive administrative datasets
caliber-multimorbidity-shiny
Source code for interactive R Shiny tools to explore and visualize multimorbidity in national electronic health records
chronological-map-phenotypes
Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
discrete_frechet
Compute the Fréchet distance between two polygonal curves in Euclidean space.
docker-ukbiobank-utils
Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch
hdr-caliber-phenotype-library
HDR UK National Phenotype Library
phemap
Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
tofu
Tofu is a Python tool for generating synthetic UK Biobank data.
ukb-biomarker-phenotypes
Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
ukbiobank-resources
A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
spiros's Repositories
spiros/discrete_frechet
Compute the Fréchet distance between two polygonal curves in Euclidean space.
spiros/tofu
Tofu is a Python tool for generating synthetic UK Biobank data.
spiros/chronological-map-phenotypes
Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
spiros/ukbiobank-resources
A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
spiros/phemap
Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
spiros/hdr-caliber-phenotype-library
HDR UK National Phenotype Library
spiros/ukb-biomarker-phenotypes
Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
spiros/docker-ukbiobank-utils
Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch
spiros/caliber-multimorbidity-shiny
Source code for interactive R Shiny tools to explore and visualize multimorbidity in national electronic health records
spiros/nkua-health-data-science
Pandas teaching materials for NKUA
spiros/apollo-backend
Apollo backend server
spiros/CCU002_02
CVD-COVID-UK project: SARS-CoV-2 vaccination and risk of venous thromboembolism and arterial thrombotic events
spiros/cmmid.github.io
spiros/ConceptLibraryClient
An implementation of the API client for the concept library in R.
spiros/COVID-Collateral
Study investigating the indirect effects of COVID-19
spiros/crawl
Dungeon Crawl: Stone Soup official repository
spiros/fonts
spiros/lab-website
spiros/lifelines
Survival analysis in Python
spiros/mkdocs
Project documentation with Markdown.
spiros/OnToma
Map your disease and phenotype terms to the Open Targets platform ontology
spiros/PheWAS
The PheWAS R package
spiros/PokemonRedExperiments
Playing Pokemon Red with Reinforcement Learning
spiros/scikit-surgerydocker
This repo describes with a simple example how to use docker to containerise your project/algorithm
spiros/starter-academic-1
🎓 Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify
spiros/starter-research-group
👥 Create a stunning Research Group Website with Wowchemy and Hugo
spiros/test123123
spiros/ukbb-srmed
Text matching UK Biobank Self-Reported medication descriptions for medication classification
spiros/ukbiobank-read-to-phecode
Repository for Denaxas S. et al., AMIA Annu Symp Proc. 2021; 2021: 362–371.
spiros/vsts-docs
This repo is the home of the official Azure DevOps documentation for Microsoft. GitHub Issues filed in this repository should be for problems with the documentation.