spisakt

Professor of Predictive Neuroscience @pni-lab @placebo-imaging-consortium

Predictive NeuroImaging Lab, Institute of Artificial Intelligence in Medicine, Department of Diagnostic and Interventional Radiology and Neuroradiology,, University Hospital EssenEssen, Germany

Pinned Repositories

mlconfound
Tools for analyzing and quantifying effects of confounder variables on machine learning model predictions.
Language:Jupyter Notebook6 1 10
BWAS_comment
Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""
Language:Jupyter Notebook6 1 10
gradientplot
Plot fMRI activation patterns in gradient space
Language:R20
PlaceboImagingMetaAnalysis
Analyses for "The effect of experimental placebo interventions on cerebral pain signature activity – a meta-analysis" by the placebo imaging collaboration. Requires MATLAB (2016b+SPM12+CANlab toolbox), R(for linear mixed models, only), MRIcroGL (PASCAL-based program for plotting/rendering images). Start at A_Run_All_Analyses.m.
Language:Matlab0 2 00
pTFCE
Probabilistic Threshold-Free Cluster Enhancement of Neuroimages
Language:R36 6 196
pTFCE_C
c++ implementation of the pTFCE method (https://spisakt.github.io/pTFCE/)
Language:C++20
pTFCE_spm
pTFCE SPM Toolbox
Language:MATLAB10 2 43
PUMI
Pypelines Utilizing a Modular Inventory
Language:Python4 3 01
ratpype
Extension interfaces and modular workflow system for using nipype for small-animal MR imaging
Language:Python3 3 11
RPN-signature
The Resting-state Pain susceptibility Network signature.
Language:Jupyter Notebook14 3 18

spisakt's Repositories

spisakt/pTFCE
Probabilistic Threshold-Free Cluster Enhancement of Neuroimages
Language:R36 6 196
spisakt/RPN-signature
The Resting-state Pain susceptibility Network signature.
Language:Jupyter Notebook14 3 18
spisakt/pTFCE_spm
pTFCE SPM Toolbox
Language:MATLAB10 2 43
spisakt/BWAS_comment
Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""
Language:Jupyter Notebook6 1 10
spisakt/PUMI
Pypelines Utilizing a Modular Inventory
Language:Python4 3 01
spisakt/ratpype
Extension interfaces and modular workflow system for using nipype for small-animal MR imaging
Language:Python3 3 11
spisakt/gradientplot
Plot fMRI activation patterns in gradient space
Language:R20
spisakt/pTFCE_C
c++ implementation of the pTFCE method (https://spisakt.github.io/pTFCE/)
Language:C++20
spisakt/benchmark_rsfMRI_prediction
Minimal scripts available for predictions on multiple datasets
Language:Python1 2 00
spisakt/rl_lecture
Short Lecture on Reinforcement Learning: model-free vs. model-based
Language:Jupyter Notebook1
spisakt/PlaceboImagingMetaAnalysis
Analyses for "The effect of experimental placebo interventions on cerebral pain signature activity – a meta-analysis" by the placebo imaging collaboration. Requires MATLAB (2016b+SPM12+CANlab toolbox), R(for linear mixed models, only), MRIcroGL (PASCAL-based program for plotting/rendering images). Start at A_Run_All_Analyses.m.
Language:Matlab0 2 00
spisakt/badges
:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yourse!
Language:Makefile
spisakt/bids-specification
Brain Imaging Data Structure (BIDS) Specification
spisakt/bids-website
Website for the Brain Imaging Data Structure standard.
spisakt/C-PAC
Configurable Pipeline for the Analysis of Connectomes
Language:Python
spisakt/cluster-utils
Collection of utilities / helper scripts to make life easier on our HPC clusters.
spisakt/CV_moderncv
My latex CV with the 'moderncv' package
Language:TeX2 0
spisakt/CV_twentysecondcv
My latex CV with the twentysecondcv package
Language:TeX
spisakt/Dataset-Bias
Detect and correct bias in neuroimaging
spisakt/docker-shields
Shields.io in a Docker image :whale:
Language:Dockerfile
spisakt/example
This an example app that can serve as a template.
Language:Python
spisakt/FakeSite
MkDocs-based collection of jazz standard notations
Language:Python
spisakt/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Language:HTML
spisakt/magpie
Magpie contains a number of scripts for running Big Data software in HPC environments, including Hadoop and Spark. There is support for Lustre, Slurm, Moab, Torque. LSF, and more.
spisakt/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Language:Python2 0
spisakt/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
Language:Python0 0
spisakt/Neuroimaging_Pattern_Masks
Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
Language:MATLAB
spisakt/seaborn
Statistical data visualization in Python
Language:Python
spisakt/test
spisakt/TestGitBingellab
1 0