Pinned Repositories
advent-of-code-2016
My Python3 solutions to http://adventofcode.com/2016
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
autoadapt
Automatic quality control for FASTQ sequencing files
biopython
Official git repository for Biopython (converted from CVS)
chkbit-py
Checks the data integrity of your files across backups!
circlator
A tool to circularize genome assemblies
clusterscluster
Look for similar secondary metabolite biosynthetic gene clusters in a set of microbial genomes.
cotrasif
spock's Repositories
spock/cotrasif
spock/biopython
Official git repository for Biopython (converted from CVS)
spock/advent-of-code-2016
My Python3 solutions to http://adventofcode.com/2016
spock/AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
spock/autoadapt
Automatic quality control for FASTQ sequencing files
spock/chkbit-py
Checks the data integrity of your files across backups!
spock/circlator
A tool to circularize genome assemblies
spock/clusterscluster
Look for similar secondary metabolite biosynthetic gene clusters in a set of microbial genomes.
spock/DALIGNER
Find all significant local alignments between reads
spock/docker-mailserver
A fullstack but simple mailserver (smtp, imap, antispam, antivirus, ssl...) using Docker.
spock/dockerpi
A Virtualised Raspberry Pi inside a Docker image
spock/funannotate
Eukaryotic Genome Annotation Pipeline
spock/HINGE
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
spock/hug
Embrace the APIs of the future. Hug aims to make developing APIs as simple as possible, but no simpler.
spock/prokka
Rapid prokaryotic genome annotation
spock/pyahocorasick
Python module (C extension and plain python) implementing Aho-Corasick algorithm
spock/pyFileFixity
📂🛡️Suite of tools for file fixity (data protection for long term storage⌛) using redundant error correcting codes, hash auditing and duplications with majority vote, all in pure Python🐍
spock/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
spock/rpackages
R package development - the Leek group way!
spock/track
personal computer usage tracker