Pinned Repositories
10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
BatchNorm
cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
compassR
An R library for conducting analyses on COMPASS data.
CytoExploreR
Interactive Cytometry Data Analysis
ggunchull
A ggplot extension for drawing smooth non-convex circles around a set of points.
GseaVis
An implement R package to visualize GSEA results
sponge90's Repositories
sponge90/10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
sponge90/awesome-chatgpt-prompts
This repo includes ChatGPT prompt curation to use ChatGPT better.
sponge90/Batch-effect-removal-benchmarking
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
sponge90/BatchNorm
sponge90/cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
sponge90/compassR
An R library for conducting analyses on COMPASS data.
sponge90/CytoExploreR
Interactive Cytometry Data Analysis
sponge90/ggunchull
A ggplot extension for drawing smooth non-convex circles around a set of points.
sponge90/GseaVis
An implement R package to visualize GSEA results
sponge90/infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
sponge90/jjAnno
An annotation package for ggplot plot
sponge90/luca
Single-cell Lung Cancer Atlas with 1.2M cells
sponge90/minfi
Devel repository for minfi
sponge90/msigdf
Molecular Signatures Database (MSigDB) in a data frame
sponge90/my_WGCNA
sponge90/nichenetr
NicheNet: predict active ligand-target links between interacting cells
sponge90/rCausalMGM
R package for causal MGM algorithms implemented in C++
sponge90/scDIOR
scDIOR: Single cell data IO softwaRe
sponge90/SCP
Single Cell Pipeline
sponge90/scRNAtoolVis
Useful functions to make your scRNA-seq plot more cool!
sponge90/seurat-wrappers
Community-provided extensions to Seurat
sponge90/single-cell-papers-with-code
Papers with code for single cell related papers
sponge90/songpeng
sponge90/sscVis
simpler single cell RNAseq data Visualization
sponge90/STARTRAC
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
sponge90/v2ray
最好用的 V2Ray 一键安装脚本 & 管理脚本
sponge90/v2ray-core
A platform for building proxies to bypass network restrictions.