sriramsrikant
Post-doctoral scientist in the Laub Lab, Dept of Biology, MIT. Ph.D from Gaudet Lab and Murray Lab, Dept of MCB, Harvard.
Dept. of Biology, MITCambridge, MA
Pinned Repositories
2020-CB_ABC-selectivity
Code-base for my ABC-selectivity paper in Current Biology
2020-FEBS_ABC-evolution
Collection of files and Jupyter lab notebooks written to extract ABC protein domains from proteomes. Performed for FEBS review.
2022_T4-toxIN-evo
This is the code-base used in the analysis of the T4 experimental evolution to overcome toxIN. Submitted to support manuscript being prepared.
ABC-selectivity
These are iPython notebooks used for analysis in my 2019 ABC-selectivity paper.
medusa
A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
OD_growth_finder
To help out the Laub labs. Finds growth rates from OD vs. time measurements on a plate reader.
pheromoneFinder
Code-base to identify fungal pheromones from genome sequences. Written for publication being prepared from the Murray Lab
plasmids
plasmid maps for my dissertation
seqPlay
This is a set of scripts that help in analysing sequences of DNA / Protein and parse them for various uses.
TranslocaseFit
Collaboration with Hannah Foster (Burton Lab)
sriramsrikant's Repositories
sriramsrikant/2020-FEBS_ABC-evolution
Collection of files and Jupyter lab notebooks written to extract ABC protein domains from proteomes. Performed for FEBS review.
sriramsrikant/pheromoneFinder
Code-base to identify fungal pheromones from genome sequences. Written for publication being prepared from the Murray Lab
sriramsrikant/2020-CB_ABC-selectivity
Code-base for my ABC-selectivity paper in Current Biology
sriramsrikant/2022_T4-toxIN-evo
This is the code-base used in the analysis of the T4 experimental evolution to overcome toxIN. Submitted to support manuscript being prepared.
sriramsrikant/ABC-selectivity
These are iPython notebooks used for analysis in my 2019 ABC-selectivity paper.
sriramsrikant/medusa
A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
sriramsrikant/OD_growth_finder
To help out the Laub labs. Finds growth rates from OD vs. time measurements on a plate reader.
sriramsrikant/plasmids
plasmid maps for my dissertation
sriramsrikant/seqPlay
This is a set of scripts that help in analysing sequences of DNA / Protein and parse them for various uses.
sriramsrikant/TranslocaseFit
Collaboration with Hannah Foster (Burton Lab)