/FRAM_STRAIT_WSC20_data_analysis

Long read metagenomics SOP

Primary LanguageRGNU General Public License v3.0GPL-3.0

Spatial heterogeneity in carbohydrates and their utilisation by microbial communities in the high North Atlantic

This repository contains detailed descriptions of the bioinformatic and statistical analysis as well as access to necessary datafiles in order to replicate the pipeline and results presented in our manuscript.

  1. Taxonomic and functional profiling of PacBio HiFi read metagenomes : detailed description along with code used to taxonomically and functionally annotate Pacbio HiFi read metagenomes.

  2. Ribosomal protein analysis to assess community diversity and complexity

  3. Metagenome-assembled genome recovery : pipeline used to reconstructed metagenome-assembled genomes from PacBio HiFi metagenomes

  4. Replicating the statistical analysis and producing the figures presented in the manuscript