Pinned Repositories
Algorithms_Example
List of Algorithms
geneLift
Gene model transfer from closely related reference genomes using cDNA alignments
srividya22's Repositories
srividya22/geneLift
Gene model transfer from closely related reference genomes using cDNA alignments
srividya22/Algorithms_Example
List of Algorithms
srividya22/100-shell-script-examples
Collection of shell scripts found on the internet
srividya22/Answers
Random code produced to answer questions on biostars/seqanswers/etc.
srividya22/assembly-stats
Assembly statistic visualisation
srividya22/Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
srividya22/awesome-spn
A structured list of resources about Sum-Product Networks (SPNs)
srividya22/benchmarkRNA
srividya22/benchmarkRNASeq
srividya22/biocode
Bioinformatics code libraries and scripts
srividya22/conda-move
Move environments from an existing conda installation to another directory
srividya22/deeplearning-biology
A list of deep learning implementations in biology
srividya22/dotPlotly
Generate an interactive dot plot from mummer or minimap alignments
srividya22/elements-of-programming-interviews
Method stubs and test cases for the problems from Elements of Programming Interviews
srividya22/gblaster
Estimate Reference Gene Copy Numbers in a Draft Assembly.
srividya22/genomeGTFtools
convert various features into a GFF-like file for use in genome browsers
srividya22/genomics_utils
srividya22/gff3-py
Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files
srividya22/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
srividya22/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
srividya22/mikado
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
srividya22/mxnet-the-straight-dope
An interactive book on deep learning. Much easy, so MXNet. Wow.
srividya22/NAM-genomes
Detailed bioinformatics scripts and methods used in the NAM genome paper.
srividya22/narratives
Narrative markdown files accessed via nextstrain.org/narratives/x
srividya22/ncov_nextstrain
Local Nextstrain version for custom builds
srividya22/nextstrain_JHU
Nextstrain build for novel coronavirus (nCoV)
srividya22/polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
srividya22/RaGOO
Fast Reference-Guided Scaffolding of Genome Assembly Contigs
srividya22/srividya22.github.io
Online Resume Link :
srividya22/vgp-assembly
VGP repository for the genome assembly working group