Extracting patches from WSI and binary masks simultaneously using Histoprep, taking into account downsampling
Thank you to the histoprep authors for an amazing library.
Histoprep is available here: https://github.com/jopo666/HistoPrep
If you use Histoprep for research, please cite it:
@misc{histoprep,
author = {Pohjonen, Joona and Ariotta, Valeria},
title = {HistoPrep: Preprocessing large medical images for machine learning made easy!},
year = {2022},
publisher = {GitHub},
journal = {GitHub repository},
howpublished = {https://github.com/jopo666/HistoPrep},
}