sshen82

AdaLiftOver

Adaptive LiftOver

annotated_deep_learning_paper_implementations

🧑‍🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

BandNorm

Simple Normalization Method for single-cell Hi-C

BandNorm_and_scVI-3D_manuscript

Code for generating figures and tables from "Normalization and De-noising of Single-cell Hi-C Data with BandNorm and scVI-3D"

bash-handbook

:book: For those who wanna learn Bash

Binary-Tensor

Low-rank tensor estimation from binary observations

FreeHiCLite

FreeHiCLite r package to perform FreeHiC

patchseq_human_L23

Code for reproducing the analyses presented in "Human cortical expansion involves diversification and specialization of supragranular intratelencephalic-projecting neurons".

PlotNeuralNet

Latex code for making neural networks diagrams

pytorch_geometric

Graph Neural Network Library for PyTorch

sshen82/BandNorm_and_scVI-3D_manuscript

Code for generating figures and tables from "Normalization and De-noising of Single-cell Hi-C Data with BandNorm and scVI-3D"

sshen82/BandNorm

Simple Normalization Method for single-cell Hi-C

sshen82/AdaLiftOver

Adaptive LiftOver

sshen82/annotated_deep_learning_paper_implementations

🧑‍🏫 59 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

sshen82/bash-handbook

:book: For those who wanna learn Bash

sshen82/Binary-Tensor

Low-rank tensor estimation from binary observations

sshen82/FreeHiCLite

FreeHiCLite r package to perform FreeHiC

sshen82/patchseq_human_L23

Code for reproducing the analyses presented in "Human cortical expansion involves diversification and specialization of supragranular intratelencephalic-projecting neurons".

sshen82/PlotNeuralNet

Latex code for making neural networks diagrams

sshen82/pytorch_geometric

Graph Neural Network Library for PyTorch

sshen82/scvi-tools

Deep generative models for single-cell omics data

sshen82/sshen82.github.io

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sshen82/STAT-628

sshen82/STAT-628-Module3