stajichlab/AAFTF

AAFTF pipeline always fails at vecscreen step

Closed this issue · 2 comments

rfitak commented

I had no issues running each step of the pipeline independently, but when I tried to run AAFTF in pipeline mode it always failed at the vecscreen step. Turns out there is just a simply typo on line 137 in the pipeline.py script. Can you remove the space?

# please change
    if not checkfile(basename + ' .vecscreen.fasta'):
# to
    if not checkfile(basename + '.vecscreen.fasta'):
hyphaltip commented

okay thank will fix - I rarely use pipeline mode so sorry for not testing that better.

hyphaltip commented

Fixed - will push new release

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