stajichlab/AAFTF

Issues

• Memory Insufficient for Samtools in Polish

  #30 opened 21 days ago by bpeacock44
  5

• AAFTF filter urllib issue

  #29 opened 3 months ago by Okompath
  0

• aaftf filter URL issue

  #28 opened 4 months ago by Bambi3024
  2

• spades assembly failed

  #27 opened 5 months ago by Gian77
  4

• AAFTF pipeline exiting when mito fails

  #26 opened 7 months ago by Kata-Pa
  3

• masurca polca.sh breaks with recent samtools

  #25 opened a year ago by hyphaltip
  1

• sourmash LCA database update url?

  #15 opened a year ago by nextgenusfs
  18

• error when running AAFTF filter and AAFTF vecscreen

  #21 opened a year ago by njliangdong
  5

• Do vecscreen and sourpurge have similar functions?

  #22 opened a year ago by maruiqi0710
  6

• [Enhancement] Assembly for Nanopore reads

  #20 opened a year ago by llk578496
  2

• AAFTF pipeline always fails at vecscreen step

  #19 opened 2 years ago by rfitak
  2

• Integrate NCBI tax tool in screening

  #7 opened 5 years ago by hyphaltip
  2

• Support single-end and interleaved fastq data

  #2 opened 2 years ago by hyphaltip
  3

• support other assemblers: dipspades

  #9 opened 4 years ago by hyphaltip
  1

• Add racon as polishing step

  #14 opened 3 years ago by hyphaltip
  0

• Add GC% in 'assess' command

  #10 opened 3 years ago by hyphaltip
  1

• Out of Memory on default pilon run

  #13 opened 3 years ago by hyphaltip
  1

• After to setup of the requirements, how to install? Is it necessary a sudo user?

  #11 opened 4 years ago by nickolasmenezes
  4

• use bbduk.sh (BBMap) for filter step instead of bwa/bowtie matching reads

  #4 opened 5 years ago by hyphaltip
  6

• Specify version numbers of all sub-tools

  #6 opened 5 years ago by hyphaltip
  0

• Generate command list as top-level running

  #3 opened 6 years ago by hyphaltip
  1

• different gunzip/gzip options on osx/linux in vecscreen.py

  #1 opened 6 years ago by hyphaltip
  3