/Comparative_pipeline

Comparative genomics pipeline

Primary LanguagePerlMIT LicenseMIT

Comparative_pipeline

Comparative genomics pipeline

Framework and analysis for comparative genomics

  1. Domain profiling
  2. Phylogenetic trees
  3. Fast Ortholog Building
  4. Summaries and queries of Ortholog sets

Dependancies

  • For gather_hmmsearch_domain_counts - needs esl-sfetch from HMMER/Easel package if you want to generate multi-fasta files of the sequences which match domains.