The MsExperiment package provides the MsExperiment class that can
be used to store and manage all aspects related to a complete
proteomics or metabolomics mass spectrometry experiment. This includes
- experimental desing
- raw data: spectra
- raw data: chromatograms
- proteomics identification results and protein database
- quantitative features
The respective data handling functionality is handled by dedicated
packages such as Spectra for spectra data, Features for
quantitative features, Biostrings for fasta files, ...
This package is part of the RforMassSpectrometry initiative: https://www.rformassspectrometry.org/