/poreture

Centerline Extraction, Skeletonization Methods, and Interbranch/Pore Segment Measurements.

Primary LanguagePythonOtherNOASSERTION

Poreture

The "poreture" package implements centerline extraction and skeletonization methods.

References:

TL Kline, M Zamir, EL Ritman, "Accuracy of microvascular measurements obtained from micro-CT images," Annals of biomedical engineering 38 (9), 2851-2864, 2010

Maintainers

- Timothy Lee Kline

Contributors

-

Dependencies

The required dependencies to build the software are:

  • python
  • numpy
  • scipy
  • skfmm
  • nibabel

Install

This packages uses distutils, which is the default way of installing python modules. To install in your home directory, use:

python setup.py install --home

To install for all users on Unix/Linux:

python setup.py build
sudo python setup.py install

Development

Follow: Fork + Pull Model:

https://help.github.com/articles/using-pull-requests