/Adineta_bertella_Suppl

Accompanying repository to Anischenko et al. 2023 Adineta bertella sp. n.

Adineta_bertella_Suppl

Accompanying repository to Anischenko et al. 2023 Adineta bertella sp. n., a new bdelloid rotifer from Svalbard cryoconite

Contents

  1. README.md — this file
  2. SCL-Ad08-*CO.ab1 — Cox1 gene Sanger traces (chromatograms)
  3. Adineta_524seq.fasta — initial alignment, 524 sequnces
  4. Adineta_524seq_GTR.nwk — tree obtained from 524 seq alignment
  5. Adineta_167seq.fasta — smaller alignment, 167 sequences
  6. Adineta_167seq_part.nwk — IQTree ML phylogeny, TIM+I+Г4 model for 1st and 2d codon positions, GTR+R3 model for 3d codon positions
  7. Adineta_167seq_mtInv.nwk — IQTree ML phylogeny, invertebrate mitochondrial empirical amino acid substitution model (Le et al. 2017)
  8. Adineta_167seq_JC.nwk — IQTree ML phylogeny, JC+R3 substitution model
  9. Adineta_167seq_TN.nwk — IQTree ML phylogeny, TN+R3 substitution model
  10. Adineta_167seq_HKY.nwk — IQTree ML phylogeny, HKY+R3 substitution model
  11. Adineta_167seq_part_Yule.nwk — BEAST Bayesian phylogeny, Yule priors
  12. Adineta_167seq_part_Yule.log — BEAST traces, Yule priors
  13. Adineta_167seq_part_BirthDeath.nwk — BEAST Bayesian phylogeny, Birth-Death priors
  14. Adineta_167seq_part_BirthDeath.log — BEAST traces, Birth-Death priors
  15. Adineta_167seq_part_CoalExp.nwk — BEAST Bayesian phylogeny, Coalescent Exponential priors
  16. Adineta_167seq_part_CoalExp.log — BEAST traces, Coalescent Exponential priors