problem output assoress lineage = TRUE which column correspond to what
Closed this issue · 3 comments
The p-value go until -6
Hello,
I would like to have some explanation
I run fitgam and assoress as followed on a data set containing
class: SlingshotDataSet
lineages: 6
curves: 6
assocRes <- associationTest(sce, lineages = TRUE, l2fc = log2(2))
I do not get the output of assores which column correspond to which lineage?
Thanks for your help
I believe columns containing '_1' in their names correspond to lineage 1, and '_2' lineage 2, and so on.
I believe columns containing '_1' in their names correspond to lineage 1, and '_2' lineage 2, and so on.
So what are the 3 first columns containing no _number?
thanks
Hi @A-legac45
The first three columns containing no number are tests performed across all lineages, so-called global or omnibus tests. We describe this in detail in our manuscript as well.