Pinned Repositories
BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
bulkATACGC
Normalization and GC-content effects in bulk ATAC-seq data
hbcRegenOE
scran
Clone of the Bioconductor repository for the scran package.
traviz
Trajectory functions for visualization and interpretation.
stageR
stageR package
tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
zingeR
zero-inflated negative binomial gene expression in R
koenvandenberge's Repositories
koenvandenberge/bulkATACGC
Normalization and GC-content effects in bulk ATAC-seq data
koenvandenberge/hbcRegenOE
koenvandenberge/scran
Clone of the Bioconductor repository for the scran package.
koenvandenberge/traviz
Trajectory functions for visualization and interpretation.
koenvandenberge/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
koenvandenberge/cellxgene-documentation
Documentation for the cellxgene product
koenvandenberge/covid19Processing
koenvandenberge/dayjob
A collection of R functions or settings that I use all the time and was worth collecting.
koenvandenberge/DESeq2
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.
koenvandenberge/dynnormaliser
koenvandenberge/EDASeq
Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.
koenvandenberge/edgeR
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/edgeR.html Contributions: http://bioinf.wehi.edu.au/edgeR. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=edgeR.
koenvandenberge/GPfates
koenvandenberge/koenvandenberge.github.io
Personal website.
koenvandenberge/p63-HBC-diff
Code and resources related to the olfactory HBC stem cell differentiation project (oeHBCdiff)
koenvandenberge/pigeonsTom
A Shiny app for tracking my brother's racing pigeons' performance
koenvandenberge/pollenZI
koenvandenberge/prosstt
PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
koenvandenberge/qsmooth
Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
koenvandenberge/rnaseqDTU-1
RNA-seq workflow for differential transcript usage following Salmon quantification