koenvandenberge

koenvandenberge's Stars

• stat20/stat20

  Course materials for Stat 20: Introduction to Probability and Statistics at UC Berkeley

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• LTLA/SingleCellThoughts

  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.

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• milanmlft/swapper

  Simulate DE Signal By Feature Swapping

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• markvanderlaan1967/Lasso-and-Beyond

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• stephaniehicks/qsmooth

  Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

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• immunomind/immunarch

  🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

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• timoast/sinto

  Tools for single-cell data processing

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• ncborcherding/scRepertoire

  A toolkit for single-cell immune profiling

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• mixxxdj/mixxx

  Mixxx is Free DJ software that gives you everything you need to perform live mixes.

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• statOmics/tradeSeq

  TRAjectory-based Differential Expression analysis for SEQuencing data

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• tianxili/HCD

  Hierarchical community detection by recursive bi-partitioning

  92

• grimbough/code.bioconductor.org

  Tools for browsing the Bioconductor code repository

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• HectorRDB/bioc2021trajectories

  Repository for the Bioc2021 workshop.

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• drostlab/philentropy

  Information Theory and Distance Quantification with R

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• popgenmethods/lecture_notes

  Lecture Notes on Computational and Mathematical Population Genetics

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• tweepy/tweepy

  Twitter for Python!

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• drisso/learn2count

  Structure learning based for zero-inflated negative binomial data

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• RalfG/github_style_poster_template

  Academic poster PowerPoint template in a GitHub page style

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• rafalab/misc

  Miscellaneous documents

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• MarioniLab/EmbryoTimecourse2018

  Data and analysis scripts for our Embryo Timecourse paper.

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• czi-hca-comp-tools/easy-data

  easy access to benchmark datasets

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• Bioconductor/TENxBrainData

  An ExperimentHub package for the 1.3 million brain cell 10X single-cell RNA-seq data set.

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• Bioconductor/TENxBrainAnalysis

  R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics

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• agitter/single-cell-pseudotime

  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

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• Bioconductor/BiocStickers

  Stickers for some Bioconductor packages - feel free to contribute and/or modify.

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