Running ABC and compiler issue
Opened this issue · 9 comments
I thought I posted this issue yesterday but since I don't see it I am assuming I forgot to submit it, but if this a duplicate I apologize.
I am trying to run an ABC on hyak using EasyABC. However that package requires the locfit package which I can't get to install. I have tried installing from Cran, github, using devtools, remotes, and installing from the tar.gz. Nothing works. From all of the searches I have done the best explanation I can find is that the culprit in the default compiler on hyak. I can install the package on the CSDE system and locally with no problem so I think this is probably the source of the problem. This is a bit out of my lane so any suggestions would be appreciated.
Is there a way to change the compiler that is being used?
I've never used Hyak so I can't help with anything Hyak-specific.
Is there an error message (or messages) from the attempted install(s) of locfit you can share?
@AdrienLeGuillou : can you help Deven here please.
Hi @dth2, what error are you getting and what version of R are you using?
I use the following script to load the R module (on a project where I use EpiABC)
#!/bin/bash
. /gscratch/csde/spack/spack/share/spack/setup-env.sh
module load r-4.0.0-gcc-9.2.0-p7wezulcan you try with it?
This works. Thanks so much.
-D
@martinamorris I think it is. @smjenness, should I put it in the "build" folder of the "computing" repo where you treat the building of the R process? Otherwise, I can work on a "hyak" subfolder on with a README with the steps to follow to work with R on hyak
Categories are the Achilles heel of the wiki... But I vote for this: https://github.com/statnet/computing/wiki/build
Maybe you're working on that now? It's showing the the TOC, but empty.
@martinamorris, I was thinking about the folder. But you are right, the wiki is the way to go.