steffen-klein
PostDoc at EMBL in the Mahamid Lab. Currently visiting scientist at UW in the Baker Lab. Interested in cryo-CLEM and protein design.
European Molecular Biology Laboratory (EMBL)Heidelberg
Pinned Repositories
cryoCLEM
Toolbox for post-correlation cryo-CLEM workflow developed at Chlanda Lab, Heidelberg University.
align-stacks
Matlab script to align two fluorescence light composite stacks with each other. Part of the post-correlation on-lamella CLEM workflow. See https://www.biorxiv.org/content/10.1101/2020.02.27.966739v1.full
cryocare-script
MIP-stitching-cryoCLEM
FIJI macro for maximum intensity projection and image stitching of files acquired with a Leica cryoCLEM microscope. Matlab script to align two fluorescence light composite stacks with each other. Part of the post-correlation on-lamella CLEM workflow. See https://www.biorxiv.org/content/10.1101/2020.02.27.966739v1.full
motioncor2-script
Small shell script to automatically align frames using MotionCor2 and split frames to even / odd stacks for subsequent denoising with CryoCare
steffen-klein's Repositories
steffen-klein/align-stacks
Matlab script to align two fluorescence light composite stacks with each other. Part of the post-correlation on-lamella CLEM workflow. See https://www.biorxiv.org/content/10.1101/2020.02.27.966739v1.full
steffen-klein/cryocare-script
steffen-klein/MIP-stitching-cryoCLEM
FIJI macro for maximum intensity projection and image stitching of files acquired with a Leica cryoCLEM microscope. Matlab script to align two fluorescence light composite stacks with each other. Part of the post-correlation on-lamella CLEM workflow. See https://www.biorxiv.org/content/10.1101/2020.02.27.966739v1.full
steffen-klein/motioncor2-script
Small shell script to automatically align frames using MotionCor2 and split frames to even / odd stacks for subsequent denoising with CryoCare