The script Bray_Peak_Intensity_Example.r generates the folders (and associated files) starting with HRMS. Different error ranges can be specified in the script and the numeric values in the folder names indicate those error ranges. There is a brief summary of what the script does at the top of the script file.
The script Obs_Predict_R2_Rich_Vary.r generates the files Obs.v.True.Rsq_v_Rich.pdf and Pred.v.Obs_R2_vs_Rich.csv. There is a brief summary of what the script does at the top of the script file.
The folder 'Other scripts' includes one or more scripts that are exploratory and likely need more work to be fully validated.