stenglein-lab/TaxAssessor

Issues

• Error when uploading empty alignment file

  #32 opened 8 years ago
  2

• Permissions issue writing temp files

  #31 opened 8 years ago
  1

• Support accession (in addition to) accession.version for genes of interest

  #30 opened 8 years ago
  0

• In tax abundance bar chart, the scale minimum is 1, so taxa w/ 1 aligning read have no bar. Perhaps have minimum be 0.1?

  #29 opened 8 years ago
  1

• # aligning reads histogram should have log scale

  #27 opened 8 years ago
  0

• Abundant taxon not visible.

  #26 opened 8 years ago
  3

• Taxonomy Report does not accurately reflect non-LCA'd data

  #25 opened 8 years ago
  0

• When I try to upload the attached file I get the error: "ReadData instance has no attribute 'seqId'". I only get this error when "Use LCA" is unchecked.

  #24 opened 8 years ago
  1

• For blast results files, the bitscore (last column) should be used instead of the e-value (2nd to last column) for ranking alignments

  #23 opened 8 years ago
  0

• when I try to upload this file, I get the error: "1"

  #22 opened 8 years ago
  3

• This file, downloaded from NCBI, is not uploading. I am getting "string index out of range" error

  #21 opened 8 years ago
  4

• Blast results files sometimes have comment lines starting with # - these should be handled

  #20 opened 8 years ago
  1

• when a file of incorrect format is supplied for upload, a cryptic error message results

  #19 opened 8 years ago
  0

• When an upload has successfully finished, the file does not have a "Read File" column in the project manager

  #18 opened 8 years ago
  0

• Coverage chart needs axes labeled

  #17 opened 8 years ago
  0

• Need to disable export buttons until a file is served

  #16 opened 8 years ago
  0

• Bar chart -> would be nice to have right click act the same as for sunburst arcs

  #15 opened 8 years ago
  1

• would be nice to have -> sunburst -> right click on some taxon -> extract reads along w/ other options.

  #14 opened 8 years ago
  0

• Navbar is 'hidden' at bottom - have to scroll down to see it - move to top?

  #13 opened 8 years ago
  1

• Need: documentation in general

  #12 opened 8 years ago
  0

• Need documentation for the command line interface

  #11 opened 8 years ago
  0

• The "contig weights" and "add Read file" are treated differently. Contig weights are added at time of read upload but reads file is not. Should they be consistent?

  #10 opened 8 years ago
  1

• Bar chart axis -> should have a label (# aligning reads).

  #9 opened 8 years ago
  0

• Bar chart -> axis hidden on left (the 0 is half covered up)

  #8 opened 8 years ago
  0

• Should colors be reproducible?

  #7 opened 8 years ago
  1

• Bar chart -> click on taxon -> "Present in x Reads" column label should be: "# aligning reads" or something

  #6 opened 8 years ago
  0

• Gene coverage chart -> you can zoom out w/ scroll bar to have axis show beyond the size of the sequence being aligned to.

  #5 opened 8 years ago
  1

• Bar chart: size doesn't consider "contig weighting"

  #4 opened 8 years ago
  0

• bar chart -> export buttons swapped

  #3 opened 8 years ago
  0

• Export reads if not fasta file

  #2 opened 8 years ago
  0