Pinned Repositories
bead_chip_array_annotations
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
bistro
bratwurst
R package for wrapper functions, preprocessing, NMF and postprocessing
codaplot
data-science-types
Mypy stubs, i.e., type information, for numpy, pandas and matplotlib
dendritic_cells
dss_workflow
gtfanno
regionset_profiler
stephenkraemer's Repositories
stephenkraemer/regionset_profiler
stephenkraemer/bistro
stephenkraemer/codaplot
stephenkraemer/gtfanno
stephenkraemer/bead_chip_array_annotations
stephenkraemer/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
stephenkraemer/bratwurst
R package for wrapper functions, preprocessing, NMF and postprocessing
stephenkraemer/data-science-types
Mypy stubs, i.e., type information, for numpy, pandas and matplotlib
stephenkraemer/dendritic_cells
stephenkraemer/dss_workflow
stephenkraemer/dynamicTreeCut
Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
stephenkraemer/figure_report
stephenkraemer/intervaltree
A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.
stephenkraemer/lsf-smk_profile
stephenkraemer/luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
stephenkraemer/methlevels
stephenkraemer/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
stephenkraemer/seaborn
Statistical data visualization using matplotlib
stephenkraemer/smk_wgbs
stephenkraemer/snakemake-lsf
Cookiecutter for snakemake LSF profile