stephenturner
Data scientist in biotech, former academic, Principal Scientist and Head of Genomic Strategy at Colossal Biosciences
@colossal-compsci Charlottesville, VA
Pinned Repositories
annotables
R data package for annotating/converting Gene IDs
biorecap
Retrieve and summarize bioRxiv preprints with a local LLM using ollama
kgp
1000 Genomes Project Metadata R Package
oneliners
Useful bash one-liners for bioinformatics.
qqman
An R package for creating Q-Q and manhattan plots from GWAS results
slimbioinfo
Lightweight Alpine-based Docker images for common bioinformatics tools
twitterchive
Archive and analyze results from a Twitter search (**no longer maintained**)
workshops
Biological Data Science Workshops
stephenturner's Repositories
stephenturner/qqman
An R package for creating Q-Q and manhattan plots from GWAS results
stephenturner/biorecap
Retrieve and summarize bioRxiv preprints with a local LLM using ollama
stephenturner/devnotes
Random programming notes and orphan scripts
stephenturner/repo2txt
Web-based tool converts GitHub repository contents into a single formatted text file
stephenturner/Tverse
Meta package that installs my most commonly used packages
stephenturner/monthsheets
stephenturner/lifeweeks
Visualize your life in weeks
stephenturner/biorxivbsky
Chrome extension to share bioRxiv papers to Bluesky
stephenturner/rpdd
R package Docker demo
stephenturner/Tmisc
Miscellaneous utility functions for data manipulation, data tidying, and working with gene expression data and biological sequence data.
stephenturner/bdsr
Biological Data Science with R
stephenturner/dstt-rmd
CSTE DSTT RMarkdown demo
stephenturner/dsttbook
Data Science Team Training
stephenturner/alignment-extraction
Alignment extraction
stephenturner/caffeinated
Provide statistics about your caffeine level specifically when you'd be going to bed.
stephenturner/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
stephenturner/dotfiles-gitpod
Dotfiles for gitpod
stephenturner/genomeqc
Compare the quality of multiple genomes, along with their annotations.
stephenturner/mathdown
Markdown and Math Live Renderer
stephenturner/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
stephenturner/nf-core-mypipeline
stephenturner/phast
PHAST
stephenturner/python-mastery
Advanced Python Mastery (course by @dabeaz)
stephenturner/rplanes
R package to conduct plausibility analysis of epidemiological signals
stephenturner/rweekly.org
R Weekly
stephenturner/stephenturner
stephenturner/stephenturner.r-universe.dev
stephenturner/test-datasets
Test data to be used for automated testing with the nf-core pipelines
stephenturner/training
Nextflow training material
stephenturner/webr-ghp