steven-bioinfo

Pinned Repositories

• bactopia

  A flexible pipeline for complete analysis of bacterial genomes

  Language:Nextflow4251452873

• salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

  Language:C++78238839164

• OPERA-MS

  OPERA-MS - Hybrid Metagenomic Assembler

  Language:C++92148917

• cytoscape.js

  Graph theory (network) library for visualisation and analysis

  Language:JavaScript10.2k2242.8k1.6k

• Bracken

  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

  Language:C++2971326750

• networkx

  Network Analysis in Python

  Language:Python15.3k2813.2k3.3k

• ogc-geosparql

  Public Repository for the OGC GeoSPARQL Standards Working Group

  Language:HTML793337920

• strainberry

  Automated strain separation of low-complexity metagenomes

  Language:Python512115

• rxnmapper

  RXNMapper: Unsupervised attention-guided atom-mapping. Code complementing our Science Advances publication on "Extraction of organic chemistry grammar from unsupervised learning of chemical reactions" (https://advances.sciencemag.org/content/7/15/eabe4166).

  Language:Python296113171

• heatmaply

  Interactive Heat Maps for R Using plotly

  Language:R3802525473

steven-bioinfo's Repositories