stevencox/cwltool

Issues

• Worker containers do not execute commands they are sent, due to missing param

  #20 opened 7 years ago by theferrit32
  0

• Allow users to submit jobs referencing input data in remote bdbags

  #19 opened 7 years ago by theferrit32
  0

• Expression Tool

  #9 opened 7 years ago by stevencox
  0

• cwl worker containers do not launch properly

  #18 opened 7 years ago by theferrit32
  1

• Use a single CHRONOS_URL variable to specify chronos instance

  #17 opened 7 years ago by theferrit32
  0

• Containerize cwltool job execution in chronos

  #16 opened 7 years ago by theferrit32
  1

• Integrate upstream BatchSystem job handling changes into Toil chronos batch system

  #13 opened 7 years ago by theferrit32
  1

• Network latency causes data-commons module to fail creating jobs for workflows with dependent jobs

  #15 opened 7 years ago by theferrit32
  1

• Update Stars package to enable specification of chronos protocol

  #14 opened 7 years ago by theferrit32
  0

• Test Coil

  #7 opened 7 years ago by stevencox
  2

• Test Chronos Batch System in Toil

  #12 opened 7 years ago by theferrit32
  0

• Use basedir command line flag when data-commons flag is also set

  #2 opened 7 years ago by theferrit32
  2

• Generalize toil and cwltool forks to use environment variables instead of hardcoded values for chronos api

  #11 opened 7 years ago by theferrit32
  2

• WebDAV

  #4 opened 7 years ago by stevencox
  6

• Toil to Mesos

  #6 opened 7 years ago by stevencox
  2

• Allow for command line outdir specification

  #10 opened 7 years ago by theferrit32
  0

• Set job dependencies in Chronos

  #1 opened 7 years ago by theferrit32
  1

• Handle input scattering for workflow steps

  #3 opened 7 years ago by theferrit32
  1

• Rabix Composer for Coil ... and Everybody Else

  #8 opened 7 years ago by stevencox
  1

• Make Stars / Ansible deployment more robust

  #5 opened 7 years ago by stevencox
  0