/scMatchmaker

Cell-Cell Interaction Discovery in Single Cell RNA Sequencing

Primary LanguageRGNU General Public License v3.0GPL-3.0

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scMatchmaker

Cell-Cell Interaction and Ligand-Receptor Discovery in Single Cell RNA Sequencing using Earth Mover's Distance.

Installation

scMatchmaker v0.99.0

install.packages("devtools")
devtools::install_github("stevexniu/scMatchmaker")

Usage

See tutorial in vignettes/example.Rmd or scMatchmaker Reference and Get Started

© X. Steve Niu from Landau Lab