Pinned Repositories
bulk_rna_seq
A collection of scripts to analyse a bulk rna-seq experiment
chip_seq
A collection of scripts to analyse CHIP/ATAC-seq data
useful_scripts
A collection of scripts that may be useful
RADDOSE-3D
Time and space resolved simulations of X-ray induced damage to crystals
ATACseq
Work in progress! A pipeline for downstream processing of ATAC seq data, it aims to do QC on .bam files, and carry out differential alignment, processing the data and outputting R Markdown HTML files
Bioinformatics-stuff
I will try to upload useful bioinformatics things here
coding-test
cwl-airflow
Python package to extend Airflow functionality with CWL1.1 support
Pachyderm
Scripts using Python Pachyderm plugin
Quick-ATAC-Pipeline
An easy to use ATAC pipline, written for use on a linux laptop, to get your files aligned quickly
stewalsh04's Repositories
stewalsh04/ATACseq
Work in progress! A pipeline for downstream processing of ATAC seq data, it aims to do QC on .bam files, and carry out differential alignment, processing the data and outputting R Markdown HTML files
stewalsh04/Bioinformatics-stuff
I will try to upload useful bioinformatics things here
stewalsh04/coding-test
stewalsh04/cwl-airflow
Python package to extend Airflow functionality with CWL1.1 support
stewalsh04/Pachyderm
Scripts using Python Pachyderm plugin
stewalsh04/Quick-ATAC-Pipeline
An easy to use ATAC pipline, written for use on a linux laptop, to get your files aligned quickly