stjudecab

CoCoRV_nextflow_conda

Implementation of CoCoRV pipeline using Nextflow and Micromamba

CoCoRV_nextflow_singularity

Implementation of CoCoRV pipeline using Nextflow and Singularity

configs

Config files used to define parameters specific to compute environments at different Institutions

containers

Bioinformatics containers used in St. Jude CAB

stjudecab.github.io

Official website for St. Jude CAB

tools

Python package with helper tools for the nf-core community.

stjudecab/stjudecab.github.io

Official website for St. Jude CAB

stjudecab/CoCoRV_nextflow_conda

Implementation of CoCoRV pipeline using Nextflow and Micromamba

stjudecab/CoCoRV_nextflow_singularity

Implementation of CoCoRV pipeline using Nextflow and Singularity

stjudecab/configs

Config files used to define parameters specific to compute environments at different Institutions

stjudecab/containers

Bioinformatics containers used in St. Jude CAB

stjudecab/tools

Python package with helper tools for the nf-core community.

stjudecab/modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

stjudecab/st-workshop