Fast algorithms for applying lubrication corrections to fluctuating suspensions of spherical particles above a bottom wall
In order to run the code, the SuiteSparse library must be installed on the system
http://faculty.cse.tamu.edu/davis/suitesparse.html
In Ubuntu 18, this can be accomplished by running
sudo apt install libsuitesparse-dev
Additionally, the C++ libraries Boost and Eigen must be installed
Ensure that the verion of Boost is >= 1.64
In Ubuntu 18, these libraries can be installed by running, e.g.
sudo apt install libeigen3-dev
sudo apt install libboost1.67-all-dev
In addition, the following python packages must be installed via pip
pip install --user scipy
pip install --user pyamg
pip install --user scikit-sparse
To run the code, one needs to Make the C++ helper code in the directory /Lubrication
https://github.com/stochasticHydroTools/LubricationCorrections/tree/master/Lubrication
To ensure the Makefile functions properly,
Change lines
LubricationCorrections/Lubrication/Makefile
Lines 9 to 10 in eb60857
to reflect the location of Boost on your system, and change line
to relect the location of the Eigen Include directory on your system.
NOT TESTED:
If python3 is to be used, change to -lboost_python3 -lboost_numpy3 in line
To test the the C++ helper function run properly, simply run
python test.py
after a sucessful make in the /Lubrication directory. If this code produces output,
then things are working as they should.