Pinned Repositories
AIBS_cell_types
example using AIBS cell types data
AllenSDK
BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
Conductance_Parameter
covarr-de
Covariate model selection, differential and network expression.
human_marker_genes
testing marker genes using hodge et al 2019 human nucseq data
mitral_cell_diversity
Matlab code used to perform analyses and figures for exploration of role of mitral cell biophysical diversity
neuroelectro_matlab_analysis
Analysis scripts for analyzing data from NeuroElectro project
nwb_conversion
valiante_ih
R code associated with Chameh et al
stripathy's Repositories
stripathy/AIBS_cell_types
example using AIBS cell types data
stripathy/human_marker_genes
testing marker genes using hodge et al 2019 human nucseq data
stripathy/neuroelectro_matlab_analysis
Analysis scripts for analyzing data from NeuroElectro project
stripathy/nwb_conversion
stripathy/valiante_ih
R code associated with Chameh et al
stripathy/AllenSDK
stripathy/BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
stripathy/Conductance_Parameter
stripathy/covarr-de
Covariate model selection, differential and network expression.
stripathy/dplyr
Plyr specialised for data frames: faster & with remote datastores
stripathy/ephys_examples
Notebooks for illustrating analysis of intrinsic ephys data
stripathy/human_ephys_variability
initial foray into studying patient to patient ephys variability
stripathy/ipfx
stripathy/kcni-school-envs
A collection of docker environments for the KCNI Summer School
stripathy/kcni_summer
work for day 2 functional genomics
stripathy/markerGeneProfile
Marker gene profile estimation method used in NeuroExpresso manuscript
stripathy/masterOfCellTypes
Braaiiiins!
stripathy/mouseHumanTransComp
comparison of mouse and human cortical cell type specifi expression
stripathy/neuroExpressoAnalysis
Pre-print at: http://www.biorxiv.org/content/early/2017/05/18/089219
stripathy/NWB
Convert Axon Binary Files (ABF) to Neurodata Without Borders (NWB).
stripathy/nwb_hackathons
Repository for collecting materials from nwb hackathons
stripathy/patch-seq-microglia
stripathy/pseudobulk_tutorial
a basic set of tutorials to illustrate pseudobulk style DE on brain snRNAseq datasets
stripathy/scater
Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.
stripathy/SST_PRSs
stripathy/stripathy
stripathy/stripathy.github.io
stripathy/toronto_covid
quick test of avg income vs covid infection rate in toronto
stripathy/valiante_lab_abf_process
scripts for processing valiante lab abf files
stripathy/wiggleplotr
A small R package to make sequencing read coverage plots in R.