stsmall
Population geneticist working on Anopheles and parasitic nematodes (i.e., filarial worms)
University of OregonEugene, OR
Pinned Repositories
abc_scripts
scripts for running ABC analysis
abc_scripts2
able_scripts
script to format, run, process output from ABLE https://github.com/champost/ABLE
allel_scripts
scripts for running scikit-allel
An_funestus
Anfunestus_subgroup
analysis2
Analysis for the second consortium paper.
Anopheles_APAF4
Anopheles scripts
helminth_selection
single allele selection for drug resistance in helminths
popsizeabc
reformat of popsizeABC from Boitard 2016
snpArcher
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
stsmall's Repositories
stsmall/abc_scripts2
stsmall/allel_scripts
scripts for running scikit-allel
stsmall/popsizeabc
reformat of popsizeABC from Boitard 2016
stsmall/able_scripts
script to format, run, process output from ABLE https://github.com/champost/ABLE
stsmall/An_funestus
Anfunestus_subgroup
stsmall/helminth_selection
single allele selection for drug resistance in helminths
stsmall/snpArcher
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
stsmall/abc_scripts
scripts for running ABC analysis
stsmall/analysis2
Analysis for the second consortium paper.
stsmall/Anopheles_APAF4
Anopheles scripts
stsmall/AnopTrees
Ag Af ARG
stsmall/awk-1liners
simple set of 1 liner for awk/bash
stsmall/CKMRC
Close-Kin Mark-Recapture
stsmall/cross_coal
tskit_cross_coal
stsmall/dadi_scripts
stsmall/FiGS
Filarial worm Genomic Simulator
stsmall/GWideCodeML
A Python package for testing evolutionary hypotheses in genome-wide approaches.
stsmall/karyopype
A chromosomal visualization package for python.
stsmall/Kiribina_Folonzo
Script for An. funestus ecotypes Kiribina and Folonzo
stsmall/mda_models_scripts
Filarial worm Genetic Simulations, FiGS
stsmall/mtTree
fork of mtTree from 16 genomes
stsmall/partialSHIC
stsmall/pg-gan
stsmall/pixy
Software for painlessly estimating average nucleotide diversity within and between populations
stsmall/pvivax
codes for pvivax WGS
stsmall/stsmall.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
stsmall/Wb_CO1_PLoSNTDS2013
Wb CO1 Diversity Paper Scripts
stsmall/Wb_mtgenome_MolBioChemPars2012
Wb mitoGenomes scripts
stsmall/Wb_sWGA
scripts for analysis of sWGA genome data generated for Wb